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Table 1 Number of Copia retrotransposons in fungal genomes

From: Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

Class/Order species Sequences obtained with LTR Harvest Sequences (>3Kb) obtained using RepeatMasker
   GalEa FunCo1 other Copia GalEa/Copia GalEa FunCo1 other Copia GalEa/Copia
Dothideomycetes          
 Pleosporales Pyrenophora teres pp 0 0 0 ne 1 ne ne ne
 Pleosporales Pyrenophora tritici-repentis pp 76 75 50 0.38 85 89 59 0.36
 Incertae sedis Cenococcum geophilum sb 1246 184 192 0.77 2368 279 401 0.78
Eurotiomycetes
 Eurotiales Neosartorya fischeri p 1 2 9 0.08 1 2 11 0.07
 Eurotiales Talaromyces aculeatus s 12 4 3 0.63 19 4 3 0.73
 Eurotiales Talaromyces marneffei p 19 29 3 0.37 16 31 5 0.31
 Eurotiales Talaromyces stipitatus s 40 30 14 0.48 51 35 27 0.45
Leotiomycetes
 Erysiphales Erysiphe pisi pp 13 5 34 0.25 23 7 53 0.28
 Helotiales Botryotinia fuckeliana pp 3 2 0 ne 6 1 0 ne
 Helotiales Chalara longipes s 4 0 8 0.33 11 0 21 0.34
 Helotiales Meliniomyces bicolor sb 156 8 21 0.84 603 75 31 0.85
 Helotiales Meliniomyces variabilis sb 3 11 10 0.13 5 25 31 0.08
 Helotiales Sclerotinia sclerotiorum pp 1 10 8 0.05 1 12 8 0.05
 Incertae sedis Oidiodendron maius sb 11 14 39 0.17 17 17 57 0.19
Sordariomycetes
 Glomerellales Colletotrichum fiorinae pp 0 0 1 ne 0 0 1 ne
 Glomerellales Colletotrichum graminicola pp 19 0 35 0.35 151 0 53 0.74
 Glomerellales Colletotrichum higginsianum pp 0 0 0 ne 1 ne ne ne
 Glomerellales Verticillium albo-atrum pp 0 3 0 ne 1 3 0 ne
 Glomerellales Verticillium dahliae pp 1 24 0 0.04 1 26 0 0.03
 Hypocreales Beauveria bassiana ip 1 0 1 ne 2 0 1 ne
 Hypocreales Cordyceps militaris ip 13 0 3 0.81 46 0 7 0.84
 Hypocreales Metarhizium robertsii ip 0 0 3 ne 2 0 3 ne
 Magnaporthales Gaeumannomyces graminis pp 0 5 2 ne 0 46 4 ne
 Magnaporthales Magnaporthe oryzae pp 0 0 30 0.00 2 0 69 0.03
 Magnaporthales Magnaporthe poae pp 0 0 2 ne 0 0 1 ne
 Ophiostomatales Ophiostoma piceae s 0 0 0 ne 1 ne ne ne
 Sordariales Chaetomium globosum s 5 7 6 0.28 7 9 6 0.32
 Xylariales Daldinia eschschotzii EC12sb 0 0 0 ne 2 ne ne ne
 Xylariales Hypoxylon sp. CO27-5sb 1 0 0 ne 4 ne ne ne
 Xylariales Hypoxylon sp. EC38sb 0 0 1 ne 1 0 1 ne
  1. ne not estimated
  2. ppplant pathogen, ipinsect pathogen, ppathogen, sbsymbiont, ssaprotroph