PE vs SE | Exp 1a
| Exp 2a
| Exp 3a
| Exp 4a
|
Top 50 gene sets | 100 | 98 | 96 | 98 |
Top 100 | 98 | 98 | 98 | 97 |
Top 200 | 99 | 99 | 97 | 99 |
Top 400 | 99 | PE total 243 | 98 | 99 |
PE vs NS | Â | Exp 2b
| Exp 3b
| Exp 4b
|
Top 50 gene sets | Â | 98 | 96 | 98 |
Top 100 | Â | 97 | 94 | 93 |
Top 200 | Â | 99 | 96 | 99 |
Top 400 | Â | PE total 243 | 96 | 96 |
-
aPercentage concordance in the top gene sets (by FDR) found using the camera function of limma when using the SE and PE datasets for each of the experiments
-
bPercentage concordance in the top top gene sets (by FDR) found using the camera function of limma when using the PE strand specific and non-strand specific datasets for experiments 2–4