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Table 3 Observed QTLs for stem cell wall composition and conversion efficiency characters

From: Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels

QTL Year LG Position 1-LOD support interval 2-LOD support interval LOD PVE
(cM) (cM) (cM)
NDF 1 2013 2c 0.0 Start - 4.0 Start - 8.7 5.77 13.9
NDF 2 2014 3a 61.0 52.0–67.1 48.0–76.5 4.98 13.6
NDF 2 2013 3a 64.1 51.0–67.1 33.3–70.6 3.96 9.5
NDF 3 2014 3a 101.8 96.1–106.8 41.9–134.3 3.70 10.3
NDF 4 2013 3b 190.1 188.9–195.1 186.9–213.0 4.33 10.4
NDF 5 2013 3c 4.0 Start - 9.6 Start - 12.6 5.73 15.0
NDF 6 2014 3d 40.1 36.1–55.3 20.3–58.3 4.00 10.3
NDF 6 2013 3d 44.2 37.1–50.4 36.1–55.3 4.72 12.9
NDF 7 2013 4c 81.1 71.4–95.1 67.4–102.1 3.77 11.0
NDF 8 2014 4c 156.7 148.7–164.7 143.0–168.7 3.58 10.2
NDF 9 2013 6c 98.8 86.8–104.0 80.8–131.0 3.59 10.1
ADF 1 2013 3b 191.1 187.9–197.5 185.9–213.0 3.81 9.6
ADF 2 2014 4b7b 40.7 31.9–48.7 25.8–66.6 3.74 9.3
CEL 1 2013 6c 181.9 176.9–183.3 143.8–183.3 3.98 10.8
CEL/cw 1 2014 6b 18.5 14.8–22.5 4.2–60.1 4.44 11.2
CEL/cw 2 2013 6b 33.8 26.8–40.8 10.2–50.9 7.54 23.0
CEL/cw 2 2014 6b 36.8 27.8–48.9 6.2–57.1 4.78 14.6
CEL/cw 3 2014 6c 81.8 48.1–92.8 38.0–98.8 4.85 15.8
CEL/cw 3 2013 6c 82.8 72.8–89.8 53.1–92.8 9.02 29.1
CEL/cw 4 2014 6c 136.0 129.0–147.8 125.0–153.8 4.14 11.2
CEL/cw 4 2013 6c 147.8 126.0–157.8 122.0–162.8 4.61 16.5
HEM 1 2013 2c 2.0 Start - 6.7 Start - 8.7 3.78 10.3
HEM 2 2013 6b 34.8 26.8–59.1 18.5–63.1 4.88 15.5
HEM 2 2014 6b 48.9 28.8–59.1 18.5–63.1 4.16 10.7
HEM 3 2014 6c 79.8 71.8–89.8 45.1–94.8 6.06 18.5
HEM 3 2013 6c 81.8 71.8–89.8 52.1–92.8 7.81 25.6
HEM/cw 1 2013 4b7b 39.7 31.9–42.5 27.8–46.7 4.40 11.6
HEM/cw 2 2013 4d7d 55.8 52.5–58.8 49.5–61.8 3.64 9.3
HEM/cw 3 2014 6c 79.8 52.1–89.8 36.0–95.8 5.11 16.1
HEM/cw 3 2013 6c 74.8 52.1–85.8 45.1–90.8 4.61 12.7
ADL 1 2013 3c 2.0 Start - 7.0 Start - 11.6 5.18 13.4
ADL 2 2013 4c 74.4 66.4–95.1 62.4–103.1 3.87 10.8
ADL 3 2013 4d7d 31.7 26.7–37.0 16.1–4Start 3.76 11.4
ADL 4 2013 6c 116.7 109.8–132.0 106.8–138.8 3.81 10.2
ADL 5 2013 8c 7.0 2.0–9.5 Start - 11.5 5.57 14.4
ADL 6 2014 8c 28.8 25.6–33.8 20.6–36.8 5.25 13.4
ADL/cw 1 2013 3c 2.0 Start - 7.0 Start - 13.6 4.45 11.6
ADL/cw 2 2013 4d7d 31.7 26.7–37.0 9.0–4Start 3.79 11.4
ADL/cw 3 2013 4d7d 55.5 50.5–60.8 47.5–63.8 3.78 9.9
ADL/cw 4 2013 8c 6.0 2.0–9.5 Start - 12.5 5.51 14.8
ADL/cw 5 2014 8c 28.8 24.6–33.8 20.6–35.8 5.61 14.2
KL 1 2014 1b 71.7 68.2–74.7 57.2–102.9 5.23 12.8
KL 2 2013 1b 87.9 80.9–94.9 77.9–98.9 6.45 21.0
KL 2 2014 1b 87.9 79.9–96.9 56.2–106.5 4.84 16.3
KL 3 2014 1c 77.8 72.1–84.8 58.5–114.0 3.69 9.9
KL 4 2014 2a 0.0 Start - 2.0 Start - 4.0 4.66 11.4
KL 5 2014 2a 49.1 45.1–54.9 44.1–56.9 5.98 16.7
KL 6 2014 2d 102.3 95.3–105.3 81.3–118.1 5.58 15.0
KL 7 2014 3a 63.0 52.0–67.1 46.0–69.1 4.07 10.0
KL 8 2014 3d 25.3 18.3–33.3 10.6–60.5 4.30 14.6
KL 9 2014 4c 157.7 150.7–163.7 147.7–165.7 5.57 15.0
KL 10 2014 6d 76.0 66.0–87.9 62.0–120.3 3.87 10.3
KL 11 2014 6d 100.8 94.8–112.3 62.0–120.3 3.92 12.8
GLU 1 2013 6b 12.2 7.2–17.5 5.2–22.5 8.22 19.4
GLU 2 2013 6b 33.8 23.8–42.8 20.5–47.9 6.75 19.8
GLU 3 2013 6c 80.8 71.2–89.8 61.1–93.8 6.84 22.5
GLU 3 2014 6c 71.8 68.1–79.8 55.1–84.8 4.09 9.9
GLU 4 2014 10a 68.6 58.9–75.8 48.7–86.9 4.67 11.6
XYL 1 2014 4b7b 39.7 30.9–44.7 23.8–48.7 4.45 11.6
XYL 2 2014 4d7d 35.0 28.7–39.0 25.7–40.7 4.34 10.5
XYL 3 2014 4d7d 55.8 48.5–59.8 46.5–62.8 4.57 11.3
XYL 4 2014 8c 30.8 23.6–37.4 19.6–37.4 4.29 12.0
ARA 1 2014 1d 6.0 1.0–9.4 Start - 10.4 4.26 11.7
ARA 2 2013 2c 85.2 77.9–93.2 53.4–101.0 3.87 12.1
ARA 3 2014 2d 80.3 77.3–86.3 72.9–87.6 4.24 10.2
ARA 4 2014 2d 100.3 94.3–105.3 87.6–111.1 4.95 12.4
ARA 5 2014 3d 26.3 17.3–35.1 5.6–57.3 3.69 12.9
ARA 6 2013 4b7b 104.7 100.3–110.7 96.5–115.2 4.39 10.9
ARA 6 2014 4b7b 103.3 98.5–112.3 96.5–115.3 4.77 12.8
ARA 7 2013 4b7b 193.3 182.3–200.1 177.3–201.8 4.18 10.8
ARA 8 2013 4d7d 109.1 99.1–119.4 79.6–129.0 4.18 13.1
ARA 8 2014 4d7d 110.1 101.1–119.4 96.8–121.4 3.85 12.1
ARA 9 2013 5c 57.8 55.2–60.8 54.2–62.8 5.17 12.3
ARA 9 2014 5c 57.8 54.2–61.8 52.5–62.8 4.42 10.6
ARA 10 2013 5c 72.2 65.2–76.7 62.8–77.7 4.33 11.6
ARA 10 2014 5c 72.2 64.2–76.7 63.2–78.7 3.79 10.2
ARA 11 2013 6b 33.8 24.8–42.8 14.8–51.9 6.94 21.0
ARA 11 2014 6b 50.9 34.8–56.1 28.8–59.1 6.11 15.2
ARA 12 2013 6c 65.1 54.1–71.8 49.1–71.8 7.57 21.0
ARA 12 2014 6c 65.1 54.1–71.8 48.1–71.8 7.40 21.0
ARA 13 2014 6c 83.8 73.8–94.8 73.8–99.8 7.81 23.8
ARA 13 2013 6c 85.8 76.8–95.8 72.8–99.8 8.55 27.4
ARA 14 2013 6c 149.8 139.8–162.8 136.8–173.3 4.12 15.1
ARA 14 2014 6c 136.0 124.0–150.8 119.0–162.8 4.33 11.0
ARA 15 2014 10c 10.0 1.0–20.7 Start - 25.7 4.47 13.0
SacR 1 2013 3b 23.6 16.0–30.6 12.0–55.0 4.01 11.0
SacR 2 2013 3c 7.0 2.0–11.6 Start - 14.6 6.43 16.1
SacR3 2013 5c 58.8 54.2–61.8 44.0–74.7 3.92 10.2
SacR 4 2013 6b 33.8 25.8–42.8 18.5–51.9 4.31 14.7
SacR 5 2013 6c 55.1 44.0–65.1 39.0–71.2 4.44 15.3
SacR 6 2013 6c 90.8 83.8–99.8 79.8–107.8 5.96 21.9
SacR 7 2013 10b 52.2 44.8–56.7 40.8–59.7 4.19 10.7
CC 1 2014 4b7b 32.9 24.8–42.5 15.5–48.7 4.26 11.4
CC 2 2013 4d7d 30.7 26.7–36.0 17.1–39.0 4.12 12.8
CC 3 2013 8c 7.5 3.0–12.5 Start - 34.8 3.75 9.6
CC 4 2014 8c 28.8 26.6–32.8 22.6–34.8 5.65 14.7
HC 1 2014 6b 44.7 35.8–49.9 29.8–75.2 3.79 9.2
HC 2 2014 6c 71.8 64.1–79.8 54.1–85.8 4.78 11.4
GC 1 2013 1b 76.7 69.2–91.9 68.2–94.9 5.38 13.7
GC 1 2014 1b 83.9 72.7–92.9 69.2–96.9 4.62 14.7
GC 2 2013 1c 55.0 45.3–57.0 41.2–65.5 4.65 13.2
GC 2 2014 1c 54.9 44.2–62.5 39.3–64.5 4.19 11.7
GC 3 2013 1c 61.5 60.5–62.5 42.4–64.5 4.96 12.4
GC 4 2013 3c 0.0 Start - 8.0 Start - 17.6 7.00 9.8
GC 5 2014 4b7b 95.5 91.8–97.5 89.8–99.5 4.62 14.7
GC 6 2014 6d 123.3 113.3 - End 107.3 - End 3.94 14.5
GC 7 2013 8c 7.0 1.0–10.5 Start - 12.5 5.24 13.5
HD1 2014 1c 37.3 35.3–46.3 31.0–50.3 3.93 9.8
HD2 2014 3c 0.0 Start - 4.0 Start - 7.0 3.89 9.4
HD3 2014 6d 0.0 Start - 5.0 Start - 9.0 3.60 8.9
  1. LG linkage group, PVE percentage variance explained