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Table 6 Select genes from all four intersection sets that are overexpressed in the durophage

From: The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

Gene Group

Gene Name

Intersection Set

Apoptosis

 LOC107095016 (aifm4)

apoptosis-inducing factor 3-like

48hpf

96hpf

8dpf

15dpf

 LOC107104525

apoptosis-stimulating of p53 protein 2-like

  

8dpf

 

  bag1

BCL2 associated athanogene 1

48hpf

   

 LOC107103519

caspase recruitment domain-containing protein 8-like

   

15dpf

Calcium Signaling

  anxa1

annexin A1

48hpf

   

  capn3

calpain 3

48hpf

   

  capn5

calpain 5

48hpf

   

Cell Adhesion

 LOC107095872 (cdh4)

cadherin-4-like

48hpf

   

 LOC107093297

claudin-4-like

96hpf

   

Cytokine/Chemokine

  tnfaip3

TNF alpha induced protein 3

48hpf

96hpf

8dpf

 

Chaperone/Heat Shock

  dnajc27

Hsp40

48hpf

 

8dpf

 

 LOC107099519 (dnajc11)

dnaJ homolog subfamily C member 11-like

48hpf

   

Growth Factor

 LOC107091872 (epha4b)

ephrin type-A receptor 3-like

48hpf

   

 LOC107090696

ephrin type-B receptor 2-like

48hpf

   

 LOC107086153

platelet-derived growth factor receptor-like protein

  

8dpf

 

Extracellular Matrix

 LOC107102808

integrin beta-2-like

48hpf

   

 LOC107088257

integumentary mucin A.1-like

48hpf

   

  col16a1

collagen, type XVI, alpha 1

  

8dpf

 

  thsd1

thrombospondin type 1 domain containing 1

 

96hpf

  

 LOC107083667

alkaline phosphatase-like

   

15dpf

Muscle

  myoz3

myozenin3

   

15dpf

Transcription Factors

  atoh8

atonal bHLH transcription factor 8

48hpf

   

  gatad2b

GATA zinc finger domain containing 2B

48hpf

   

  ncoa1

nuclear receptor coactivator 1

48hpf

96hpf

8dpf

 

 LOC107081391

nuclear receptor coactivator 1-like

48hpf

96hpf

8dpf

15dpf

  six1

SIX homeobox 1

48hpf

   

  six4

SIX homeobox 4

48hpf

   

Other

 LOC107098473

von Willebrand factor A domain-containing protein 7-like

48hpf

   

 LOC107084756

toll-like receptor 2 type-2

   

15dpf

  1. Shown are pupfish gene names with zebrafish gene names in parentheses