Table 1 A list of identified DEGs with non-synonymous SNPs that co-localized with 4 QTL for FL
Chromosome name | Co-localized QTL name | Co-localized gene name | FPKM | log2Ratio (L10/S10) | P-value | Putative gene function | |
|---|---|---|---|---|---|---|---|
L10 | S10 | ||||||
A05/c5 | qFL-07X-c5–1 | CotAD_51212 | 0.60 | 3.51 | -2.55 | 4.7E-12 | transcription repressor OFP8-like [Gossypium raimondii] |
A11/c11 | qFL-07 W-c11–1 | CotAD_12261 | 12.56 | 5.09 | 1.30 | 5.4E-21 | putative aldo-keto reductase 1 [Gossypium arboreum] |
CotAD_34480 | 1.72 | 4.02 | -1.22 | 9.1E-07 | protein wvd2-like 1 [Theobroma cacao] | ||
D11/c21 | qFL-08A-c21–1 | CotAD_02556 | 29.97 | 74.82 | -1.32 | 1.4E-43 | proline-rich protein [Gossypium hirsutum] |
CotAD_28189 | 1.73 | 10.56 | -2.61 | 4.4E-40 | putative D-cysteine desulfhydrase 1[Gossypium raimondii] | ||
CotAD_02795 | 105.17 | 248.10 | -1.24 | 4.7E-222 | thaumatin-like protein [Gossypium raimondii] | ||
CotAD_02671 | 13.82 | 27.87 | -1.01 | 9.2E-23 | CCT motif family protein [Theobroma cacao] | ||
A12/c12 | qFL-08A-c12–1 | CotAD_25893 | 16.47 | 6.31 | 1.39 | 6.3E-35 | flavin-containing monooxygenase family protein [Theobroma cacao] |