Table 1 Numbers of reads sequenced and mapped per sample
Genotype | Hour after infestation | Biological replicates | Total read (millions) | Read filtered (millions) | Read mapped (millions) | Percentage of mapped/filtered |
|---|---|---|---|---|---|---|
R-NIL (Rag5/Rag5) | 0 | 1 | 8.7 | 8.6 | 7.7 | 90 |
0 | 2 | 21.4 | 21.0 | 19.0 | 90 | |
0 | 3 | 21.2 | 20.8 | 18.9 | 91 | |
6 | 1 | 6.9 | 6.8 | 6.2 | 90 | |
6 | 2 | 17.9 | 17.5 | 15.8 | 91 | |
6 | 3 | 19.5 | 19.0 | 16.8 | 88 | |
12 | 1 | 5.5 | 5.5 | 5.0 | 91 | |
12 | 2 | 19.7 | 19.3 | 17.4 | 90 | |
12 | 3 | 21.6 | 21.1 | 19.2 | 91 | |
48 | 1 | 8.0 | 7.8 | 6.5 | 83 | |
48 | 2 | 24.8 | 24.3 | 22.0 | 90 | |
48 | 3 | 26.6 | 26.0 | 23.2 | 89 | |
S-NIL (rag5/rag5) | 0 | 1 | 9.5 | 9.3 | 8.4 | 90 |
0 | 2 | 28.7 | 28.1 | 24.8 | 88 | |
0 | 3 | 28.1 | 27.4 | 24.7 | 90 | |
6 | 1 | 10.8 | 10.6 | 9.6 | 90 | |
6 | 2 | 24.7 | 24.1 | 21.7 | 90 | |
6 | 3 | 29.2 | 28.5 | 25.8 | 90 | |
12 | 1 | 7.9 | 7.7 | 7.0 | 90 | |
12 | 2 | 13.9 | 13.6 | 12.3 | 90 | |
12 | 3 | 21.9 | 21.5 | 19.5 | 91 | |
48 | 1 | 7.9 | 7.8 | 7.0 | 90 | |
48 | 2 | 26.0 | 25.5 | 22.9 | 90 | |
48 | 3 | 27.5 | 26.9 | 24.4 | 91 | |
Total | Â | Â | 437.9 | 428.7 | 385.8 | 90 |