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Table 3 Thirteen genes annotated in the Rag5 candidate region of chromosome 13 based on Glyma.Wm82.a2.v1 and comparison of their transcript abundance between R- and S-NIL

From: Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

Gene ID

Annotation

Log2fold change (R/S)a

 
  

0 hai

6 hai

12 hai

48hai

Glyma.13g189800

Member of ‘GDXG’ family of lipolytic enzyme

0.4

1.5**

0.7

0.7

Glyma.13g189900

Choline/Ethanoalamine kinase

0.1

0

0

0

Glyma.13g190000

Leucine-rich repeat-containing protein

0.6

-0.5

-0.2

-0.3

Glyma.13g190100

ORF protein

-0.2

0

0

0.4

Glyma.13g190200

Protease family S26 Mitochondrial inner membrane protease

-2.3****

-2.0****

-2.0****

-1.8***

Glyma.13g190300

Leucine-rich repeat-containing protein

0.9

0.3

0.6

0

Glyma.13g190400

Leucine-rich repeat-containing protein

1.2

0.5

0.7

0.1

Glyma.13g190500

Protease family S26 Mitochondrial inner membrane protease

1.3

1.7*

2.1****

0.8

Glyma.13g190600

Present only in the Glyma.Wm82.a2 assembly

2.2****

2.1****

2.0****

0.6

Glyma.13g190700

Present only in the Glyma.Wm82.a2 assembly

0.1

0.1

0

0

Glyma.13g190800

Leucine-rich repeat-containing protein

1.1

0.7

0.9

0.2

Glyma.13g190900

Protease family S26 Mitochondrial inner membrane protease

0.2

0.3

0.5

0.1

Glyma.13g191000

Protein of unknown function

0

0.1

0.1

0.4

  1. aAsterisks indicate significance levels: *, FDR < 0.05; **, FDR < 0.01; ***, FDR < 0.005; ****, FDR < 0.001