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Table 4 Recovery of removed genes in A. thaliana, averaged over five runs

From: Erratum to: OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations

  10% annotations removed 90% annotations removed
OrthoFiller de novo OrthoFiller de novo
No. genes removed 2410 2410 21,683 21,683
Total genes founda 1233 (37.5) 13,184 (426.7) 11,480 (96.2) 42,504 (223.5)
Found genes which overlap removed genesa 1106 (37.5) 4918 (130.4) 11,343 (89.0) 35,609 (149.5)
Total recovered genesa 1035 (31.72) 2268 (16.4) 10,380 (59.7) 20,430 (33.0)
Number of split genesa 67 (5.4) 1213 (23.6) 944 (34.4) 7451 (37.7)
Mean pF-score of found genesa 0.75 (0.01) 0.45 (<0.01) 0.70 (<0.01) 0.55 (<0.01)
Mean oF-score of found genesa 0.94 (<0.01) 0.51 (<0.01) 0.89 (<0.01) 0.64 (<0.01)
High-quality found genes (pF-score ≥ 0.95)a 432.0 (29.3) 640.8 (27.4) 3419.8 (21.3) 9079.6 (99.5)
Lower-quality found genes (pF-score < 0.95)a 674.6 (32.1) 4277.2 (147.8) 7923.8 (99.5) 26,529.8 (201.3)
Mean pF-score of lower-quality genesa 0.61 (0.02) 0.31 (<0.01) 0.57 (<0.01) 0.33 (<0.01)
% of lower-quality genes with oF-score < 0.95a 34.6 (1.9) 81.1 (0.9) 43.4 (0.6) 73.9 (0.1)
  1. aNumbers shown are rounded mean values from 5 disjoint removed subsets of genes, with standard deviations bracketed