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Table 3 Top 10 differentially expressed genes (each probe) between oestrogen receptor positive and negative cancers

From: Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

FDR

Log-Fold Change

Genes

Gene name

1.90E-07

1.992

TFF1

TREFOIL FACTOR 1 (BREAST CANCER, OESTROGEN-INDUCIBLE SEQUENCE EXPRESSED IN)

7.13E-06

1.511

ESR1

OESTROGEN RECEPTOR 1

6.90E-05

1.568

ESR1

OESTROGEN RECEPTOR 1

1.00E-03

1.012

LAF4

NUCLEAR PROTEIN RELATED TO AF4

1.00E-03

1.299

ESR1

OESTROGEN RECEPTOR 1

2.00E-03

0.780

C-MYB

V-MYB MYELOBLASTOSIS VIRAL ONCOGENE HOMOLOGUE (AVIAN)

3.00E-03

1.464

AREG

AMPHIREGULIN (SCHWANNOMA-DERIVED GROWTH FACTOR)

3.00E-02

−0.964

CD44

CD44 ANTIGEN (INDIAN BLOOD GROUP)

3.00E-02

0.765

LAF4

NUCLEAR PROTEIN RELATED TO AF4

3.50E-02

0.800

ERBB4

V-ERB-A ERYTHROBLASTIC LEUKEMIA VIRAL ONCOGENE HOMOLOGUE 4 (AVIAN)

  1. Well-characterised ER regulated genes are shown in bold and note each ESR1