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Table 3 Top 10 differentially expressed genes (each probe) between oestrogen receptor positive and negative cancers

From: Integrative analysis of copy number and gene expression in breast cancer using formalin-fixed paraffin-embedded core biopsy tissue: a feasibility study

FDR Log-Fold Change Genes Gene name
1.90E-07 1.992 TFF1 TREFOIL FACTOR 1 (BREAST CANCER, OESTROGEN-INDUCIBLE SEQUENCE EXPRESSED IN)
7.13E-06 1.511 ESR1 OESTROGEN RECEPTOR 1
6.90E-05 1.568 ESR1 OESTROGEN RECEPTOR 1
1.00E-03 1.012 LAF4 NUCLEAR PROTEIN RELATED TO AF4
1.00E-03 1.299 ESR1 OESTROGEN RECEPTOR 1
2.00E-03 0.780 C-MYB V-MYB MYELOBLASTOSIS VIRAL ONCOGENE HOMOLOGUE (AVIAN)
3.00E-03 1.464 AREG AMPHIREGULIN (SCHWANNOMA-DERIVED GROWTH FACTOR)
3.00E-02 −0.964 CD44 CD44 ANTIGEN (INDIAN BLOOD GROUP)
3.00E-02 0.765 LAF4 NUCLEAR PROTEIN RELATED TO AF4
3.50E-02 0.800 ERBB4 V-ERB-A ERYTHROBLASTIC LEUKEMIA VIRAL ONCOGENE HOMOLOGUE 4 (AVIAN)
  1. Well-characterised ER regulated genes are shown in bold and note each ESR1