Insertionally polymorphic sites of human endogenous retrovirus-K (HML-2) with long target site duplications

BMC Genomics

Table 2 Estimated long duplicated sequences (>10 bp) flanking LTR5_Hs

Chr	Position	Region	Structure	Length	Preintegratioin ^a	Mismatches^b	Reference^c
chr3	125689444–125689493	3q21.2	solo_LTR	18	n.d.	2	this study
chr4	16078281–16079255	4p15.32	solo LTR^d	96	n.d.	3	[13]
chr4	161582077–161582438	4q32.1	provirus	206	n.d.	1	this study
chr6	3055034–3055749	6p25.2	truncated provirus	111	determined	1	this study
chr7	16237347–16238314	7p21.2	solo_LTR	250	determined	2	[13]
chr13	23387789–23388759	13q12.12	solo_LTR	13	n.d.	2	this study
chr16	74833302–74834258	16q23.1	solo_LTR	61	n.d.	0	[13]
chr21	19933659–19941962	21q21.1	provirus	450	n.d.	0	this study

^a n.d. Not determined
^bNumber of mismatches and gaps between the duplicated sequences on the left and right
^cPreviously reported by Mamedov et al. [13]
^dTwo nucleotides present between the estimated sequences and either of the LTRs

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