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Table 1 Properties of the datasets before any filtering

From: LinkImputeR: user-guided genotype calling and imputation for non-model organisms

Dataset

Number of SNPs

Number of samples

Accuracy run time

Apple

660 214

678

6 h 48 m

Cannabis

444 821

192

8 h 43 m

Grape

830 833

96

13 h 32 m

  1. The run time to calculate accuracy for all the cases considered is also listed. 10 000 SNPs were masked for the apple and cannabis datasets, 5 000 for the grape dataset
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BMC Genomics

ISSN: 1471-2164

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