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Table 2 Summary of Illumina paired-end read sequence data, de novo assembly and detection of microsatellite repeats in the Passiflora edulis genome

From: Microsatellite marker development by partial sequencing of the sour passion fruit genome (Passiflora edulis Sims)

Sequence information

Total #

Size variation (bp)

Average length (bp)

Total (bp)

 Illumina paired-end reads

225,293,527

52–76

62.65

14,113,860,125

 Contigs

234,239

166–45,662

707

165,702,691

Microsatellite sequences

Total #

>5 repeats

  

 Compound and/or imperfect microsatellites

1,544,549

-

  

 Perfect di-nucleotides

360,162

13,391

  

 Perfect tri-nucleotides

60,669

1436

  

 Perfect tetra-nucleotides

7463

186

  

 Total

1,972,843

-

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