Identification of long non-coding RNA in the horse transcriptome

BMC Genomics

Table 1 General lncRNA statistics and the number of candidate lncRNA transcripts that passed through each filter. Filter numbers correspond to Fig. 1

		Novel I	Novel II	Novel III	Intergenic	Known lncRNA	total
Initial number of transcripts		8459	7494	6687	38,507	3956	62,216
Number of lncRNA	F1	7193	3873	1128	15,686	3523	30,998
	F2	7193	3873	1128	15,281	3523	28,503
	F3	4408	3102	726	15,162	2593	24,029
	F4	3334	2475	639	13,804	2011	20,800
Average Length (kb)		3.2	3.2	2.3	1.2	3.8	-
Average TPM		18.3	28.2	3.9	1.8	4.0	-
GC%		45.3	45.1	48.7	43.1	44.4	-
Total bp		10,604,817	7,870,739	1,465,708	16,880,112	5,658,390	-

ISSN: 1471-2164