P tetraurelia | P. biaurelia | P. sexaurelia | P. caudatum | |||||
---|---|---|---|---|---|---|---|---|
V1 | V2 | V1 | V2 | V1 | V2 | V1 | V2 | |
Genome size (nt) | 72,094,543 | 72,102,941 | 75,777,660 | 74,348,537 | 67,662,147 | 67,662,147 | 29,932,356 | 29,932,356 |
Number of scaffolds | 697 | 697 | 1426 | 1026 | 230 | 230 | 274 | 274 |
N50 | 412,884 | 412,881 | 156,715 | 159,040 | 430,207 | 430,207 | 312,370 | 312,370 |
Genomic GC content | 0.28 | 0.28 | 0.25 | 0.25 | 0.24 | 0.24 | 0.28 | 0.28 |
Gene number | 39,642 | 41,533 | 39,110 | 40,741 | 34,909 | 36,477 | 18,421 | 18,853 |
Gene length (nt) | 1433.8 | 1409.91 | 1460.56 | 1430.22 | 1462.39 | 1430.91 | 1449.52 | 1448.91 |
Percent coding | 75 | 75 | 71 | 73 | 71 | 73 | 85 | 86 |
Inter coding distance (TGA ↔ TGA) | 285.23 | 244.88 | 304.13 | 275.83 | 362.68 | 331.12 | 109.29 | 87.73 |
Inter coding distance (ATG ↔ ATG) | 451.27 | 388 | 462.77 | 410.36 | 565.88 | 501.34 | 143.39 | 120.63 |
Inter coding distance (TGA ↔ ATG) | 332.03 | 286.77 | 357.91 | 333.08 | 433.5 | 393.35 | 131.64 | 116.84 |
Protein Coding Gene number | 39,642 | 40,460 | 39,110 | 40,179 | 34,909 | 36,053 | 18,421 | 18,592 |
CDS length (nt) | 1363.32 | 1330.35 | 1375.51 | 1359.78 | 1380.08 | 1367.54 | 1386.16 | 1385.68 |
Protein Coding Gene GC content | 0.3 | 0.3 | 0.26 | 0.26 | 0.26 | 0.26 | 0.29 | 0.29 |
Non-coding gene number | 1073 | 562 | 424 | 261 | ||||
Exon number | 130,216 | 136,527 | 141,873 | 135,427 | 126,637 | 124,022 | 63,789 | 62,173 |
Median exon length (nt) | 230 | 222 | 200 | 221 | 202 | 213 | 216 | 232 |
Mean exon length (nt) | 419.01 | 411.3 | 379.19 | 412.21 | 380.44 | 402.57 | 400.3 | 423.13 |
Exon per gene | 3.28 | 3.29 | 3.63 | 3.32 | 3.63 | 3.4 | 3.46 | 3.3 |
Intron number | 90,282 | 94,711 | 102,763 | 94,686 | 91,728 | 87,545 | 45,368 | 43,320 |
Median intron length (nt) | 25 | 25 | 26 | 25 | 26 | 25 | 22 | 22 |
Mean intron length (nt) | 25.14 | 25.31 | 32.37 | 25.82 | 31.32 | 25.91 | 25.72 | 23.3 |
Number of introns >40 nt | 38 | 720 | 12,817 | 1366 | 9718 | 1218 | 2425 | 720 |