Skip to main content

Table 1 Assembly metrics of four chloroplast genomes of Urochloa forage species, using the P. virgatum plastid sequence as a reference

From: Molecular dating of phylogenetic divergence between Urochloa species based on complete chloroplast genomes

Species Total reads (bp) Reads mapped to P. virgatum cpDNA (bp) % of mapped reads cpDNA assembly size (bp) LSC size (bp) SSC size (bp) IRa size (bp) IRb size (bp) Mean coverage
U. ruziziensis 20,211,010,448 279,025,488 1% 138,765 80,798 12,537 2715 22,715 2011
U. brizantha 8,643,705,720 387,850,876 4% 138,946 81,008 12,535 22,699 22,704 2791
U. decumbens 9,018,811,776 168,717,644 2% 138,945 81,005 12,537 22,699 22,704 1321
U. humidicola 8,476,910,040 183,602,548 2% 138,976 81,017 12,535 22,711 22,713 1214
P. virgatum - - - 139,619