Table 1 Assembly metrics of four chloroplast genomes of Urochloa forage species, using the P. virgatum plastid sequence as a reference
Species | Total reads (bp) | Reads mapped to P. virgatum cpDNA (bp) | % of mapped reads | cpDNA assembly size (bp) | LSC size (bp) | SSC size (bp) | IRa size (bp) | IRb size (bp) | Mean coverage |
|---|---|---|---|---|---|---|---|---|---|
U. ruziziensis | 20,211,010,448 | 279,025,488 | 1% | 138,765 | 80,798 | 12,537 | 2715 | 22,715 | 2011 |
U. brizantha | 8,643,705,720 | 387,850,876 | 4% | 138,946 | 81,008 | 12,535 | 22,699 | 22,704 | 2791 |
U. decumbens | 9,018,811,776 | 168,717,644 | 2% | 138,945 | 81,005 | 12,537 | 22,699 | 22,704 | 1321 |
U. humidicola | 8,476,910,040 | 183,602,548 | 2% | 138,976 | 81,017 | 12,535 | 22,711 | 22,713 | 1214 |
P. virgatum | - | - | - | 139,619 | Â | Â | Â | Â | Â |