Table 1 Samples and patients
From: Genome analysis of E. coli isolated from Crohn’s disease patients
patient № | sex | age | disease | isolate name and origin | number of isolates | clinic | assembly | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
localisation | clinical activity | endoscopic activity | biopsy | aspirate from ileum lumen | feces | ||||||
1 | M | 33 | ileitis | low | 10 | RCE01–01 RCE01–02 RCE01–03 (ileum) | RCE01–04 RCE01–05 | RCE01–06 | 6 | C | RCE01 |
2 | M | 23 | ileocolitis | low | 13 | RCE02–01 RCE02–02 RCE02–03 | 3 | C | RCE02 | ||
3 | F | 37 | ileocolitis | medium | 14 | RCE03–01 RCE03–02 RCE03–03 (ileum, caecum, sigmoid) | 3 | C | RCE03 | ||
4 | F | 40 | ileocolitis-perianal | high | 0 | RCE04–01 (caecum) | RCE04–02 RCE04–03 RCE04–04 RCE04–05 RCE04–06 | 6 | C | RCE04 | |
5 | M | 32 | ileitis-jejunitis | high | 9 | RCE05 | 1 | C | RCE05 | ||
6 | M | 47 | ileocolitis | low | 15 | RCE06–01 RCE06–02 RCE06–03 RCE06–04 RCE06–05 | 5 | C | RCE06 | ||
7 | M | 32 | ileocolitis | remission | 3 | RCE07 | 1 | C | RCE07 | ||
8 | F | 29 | ileocolitis-perianal | low | 6 | RCE08 | 1 | S | RCE08 | ||
9 | M | 25 | colitis | low | 5 | RCE10 | 1 | S | RCE10 | ||
10 | M | 29 | ileocolitis | high | 8 | RCE11 | 1 | C | RCE11 | ||
Total isolates number | 28 | ||||||||||