SNP sampling method | E. benthamii | E. pellita | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Number of SNPs | DBH | WV | Number of SNPs | DBH | HT | WV | ||||||
h 2 (SE) | r gy (SE) | h 2 (SE) | r gy (SE) | h 2 (SE) | r gy (SE) | h 2 (SE) | r gy (SE) | h 2 (SE) | r gy (SE) | |||
All SNPs | 13,787 | 0.267 (0.008) | 0.162 (0.044) | 0.243 (0.008) | 0.146 (0.039) | 19,506 | 0.455 (0.005) | 0.441 (0.019) | 0.283 (0.008) | 0.342 (0.042) | 0.418 (0.005) | 0.425 (0.028) |
Randomly selected | 5000 | 0.250 (0.003) | 0.163 (0.004) | 0.234 (0.003) | 0.148 (0.004) | 5000 | 0.410 (0.006) | 0.427 (0.003) | 0.269 (0.003) | 0.336 (0.002) | 0.390 (0.004) | 0.416 (0.003) |
Randomly selected | 3000 | 0.239 (0.005) | 0.153 (0.008) | 0.226 (0.004) | 0.137 (0.008) | 3000 | 0.385 (0.006) | 0.417 (0.003) | 0.254 (0.005) | 0.328 (0.003) | 0.363 (0.006) | 0.406 (0.003) |
Randomly selected | 1500 | 0.229 (0.005) | 0.153 (0.008) | 0.217 (0.005) | 0.137 (0.008) | 1500 | 0.334 (0.005) | 0.397 (0.003) | 0.232 (0.004) | 0.313 (0.003) | 0.322 (0.004) | 0.389 (0.003) |
Randomly selected | 500 | 0.181 (0.006) | 0.104 (0.017) | 0.174 (0.005) | 0.091 (0.015) | 500 | 0.270 (0.008) | 0.364 (0.006) | 0.203 (0.003) | 0.291 (0.006) | 0.264 (0.008) | 0.361 (0.006) |
Evenly spaced 10 Kbp | 10,837 | 0.264 (0.007) | 0.159 (0.046) | 0.235 (0.007) | 0.141 (0.041) | 13,946 | 0.452 (0.004) | 0.436 (0.019) | 0.272 (0.009) | 0.340 (0.042) | 0.415 (0.010) | 0.421 (0.028) |
Evenly spaced 50 Kbp | 6867 | 0.253 (0.007) | 0.153 (0.041) | 0.242 (0.006) | 0.135 (0.035) | 7619 | 0.472 (0.008) | 0.440 (0.021) | 0.286 (0.008) | 0.339 (0.043) | 0.439 (0.008) | 0.421 (0.031) |
Evenly spaced 100 Kbp | 4634 | 0.252 (0.004) | 0.146 (0.044) | 0.241 (0.006) | 0.141 (0.036) | 4846 | 0.460 (0.006) | 0.442 (0.024) | 0.287 (0.007) | 0.339 (0.041) | 0.452 (0.008) | 0.432 (0.031) |
Evenly spaced 250 Kbp | 2281 | 0.261 (0.004) | 0.166 (0.039) | 0.258 (0.005) | 0.160 (0.029) | 2297 | 0.374 (0.007) | 0.414 (0.026) | 0.271 (0.005) | 0.328 (0.042) | 0.360 (0.004) | 0.400 (0.030) |
Evenly spaced 500 Kbp | 1203 | 0.212 (0.006) | 0.131 (0.053) | 0.199 (0.004) | 0.116 (0.050) | 1204 | 0.326 (0.004) | 0.388 (0.026) | 0.226 (0.004) | 0.306 (0.043) | 0.307 (0.005) | 0.378 (0.033) |
Evenly spaced 1 Mbp | 610 | 0.196 (0.002) | 0.111 (0.031) | 0.178 (0.003) | 0.097 (0.022) | 609 | 0.256 (0.004) | 0.364 (0.027) | 0.203 (0.004) | 0.307 (0.041) | 0.260 (0.004) | 0.365 (0.029) |
Genic regions | 7254 | 0.251 (0.008) | 0.163 (0.045) | 0.240 (0.006) | 0.148 (0.037) | 11,212 | 0.421 (0.007) | 0.433 (0.020) | 0.269 (0.008) | 0.340 (0.042) | 0.394 (0.005) | 0.426 (0.028) |
Intergenic regions | 6533 | 0.253 (0.008) | 0.152 (0.046) | 0.232 (0.005) | 0.131 (0.046) | 8294 | 0.449 (0.007) | 0.432 (0.021) | 0.289 (0.009) | 0.340 (0.041) | 0.414 (0.006) | 0.410 (0.030) |
SNPs in LE (LD-pruning) | 10,460 | 0.274 (0.011) | 0.174 (0.043) | 0.256 (0.010) | 0.161 (0.039) | 10,984 | 0.425 (0.010) | 0.426 (0.024) | 0.275 (0.007) | 0.339 (0.041) | 0.404 (0.006) | 0.413 (0.031) |