Evolutionary and genetic analysis of the VP2 gene of canine parvovirus

BMC Genomics

Table 2 RSCU analysis of the 59 synonymous codons of CPV VP2 gene

AA	Codon	CPV	AA	Codon	CPV
A(Ala)	GCA	*2.271*	P(Pro)	CCA	*2.972*
	GCC	0.113		CCC	0.007
	GCG	0.325		CCG	0.006
	GCT	1.292		CCT	1.015
C(Cys)	TGC	0.059	Q(Gln)	CAA	*1.824*
C(Cys)	TGT	*1.941*	Q(Gln)	CAG	0.176
D(Asp)	GAC	0.138	R(Arg)	AGA	*5.451*
D(Asp)	GAT	*1.863*		AGG	0.019
E(Glu)	GAA	*1.586*		CGA	0.009
E(Glu)	GAG	0.414		CGC	0.003
F(Phe)	TTC	0.074		CGG	0.259
F(Phe)	TTT	*1.926*		CGT	0.259
G(Gly)	GGA	1.483	S(Ser)	AGC	0.219
	GGC	0.225		AGT	1.774
	GGG	0.524		TCA	1.204
	GGT	*1.767*		TCC	0.002
H(His)	CAC	0.215		TCG	0.001
H(His)	CAT	*1.785*		TCT	*2.801*
I(IIe)	ATA	0.710	T(Thr)	ACA	*1.925*
	ATC	0.130		ACC	0.176
	ATT	*2.160*		ACG	0.141
K(Lys)	AAA	*1.889*		ACT	1.758
K(Lys)	AAG	0.111	V(Val)	GTA	1.569
L(Leu)	CTA	1.201		GTC	0.112
	CTC	0.001		GTG	0.431
	CTG	0.005		GTT	*1.889*
	CTT	0.518	Y(Tyr)	TAC	0.204
	TTA	*2.747*		TAT	*1.796*
	TTG	1.529
N(Asn)	AAC	0.488
N(Asn)	AAT	*1.512*

ISSN: 1471-2164