Table 4 Comparison of read statistics before and after adapter curation: NLR-Parser statistics of not adapter filtered MinION 2D and PacBio SR and adapter filtered MinION 2D pass (Canu corrected and trimmed) reads and PacBio RoI
MinION 2D pass | MinION 2D pass (trimmed, filtered, corrected) | PacBio Subreads | PacBio Reads of Insert (trimmed, filtered) | |
|---|---|---|---|---|
Number of reads containing baits | 121,170 | 93,482 | 219,934 | 74,442 |
% of reads containing baits | 62.50% | 81.98% | 57.28% | 73.73% |
NLR-Parser hits | 20,525 | 56,211 | 11,003 | 45,853 |
% NLR-Parser hits of total reads | 10.59% | 49.30% | 2.86% | 45.41% |
NLR-Parser hits scored as partial | 19,984 | 50,410 | 10,791 | 39,512 |
% NLR-Parser hits scored as partial | 97.36% | 89.68% | 98.07% | 86.17% |
NLR-Parser hits scored as complete | 541 | 5801 | 212 | 6341 |
% NLR-Parser hits scored as complete | 2.64% | 10.32% | 1.93% | 13.83% |