Table 6 Comparison of all assemblies with the annotated NLR genes using BLAST: The 649 NLR genes described by Witek et al. were mapped to each assembly. In all cases all 649 NLR genes are mapping in the assemblies
Canu MinION | Canu MinION (nanopolish) | Canu PacBio | HGAP | Geneious | |
|---|---|---|---|---|---|
Average percent identity | 98.61% ± 0.61% | 99.42% ± 0.50% | 99.62% ± 1.21% | 99.85% ± 0.70% | 100.00% ± 0.00% |
Average alignment length | 6943 bp ± 1718 bp | 6989 bp ± 1700 bp | 6501 bp ± 2000 bp | 6729 bp ± 1742 bp | 7811 bp ± 2166 bp |
BLAST hits | 591 | 594 | 577 | 606 | 649 |
% database covered | 91.06% | 91.52% | 88.91% | 93.37% | 100% |