Skip to main content

Table 1 Comparison of FDR control between MAGeCK and PBNPA

From: A permutation-based non-parametric analysis of CRISPR screen data

Dataset KBM7 Toxoplasma
Selection direction Algorithm Ctrl1 vs ctrl2 Treat1 vs treat2 Ctrl1 vs ctrl2 Ctrl1 vs ctrl3 Treat1 vs treat2 Treat1 vs treat3
Positive MAGeCK 50 18 0 1 0 1
PBNPA 38 10 0 1 1 0
Negative MAGeCK 0 3 4 2 6 28
PBNPA 0 6 0 2 0 0