From: Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds
SNP Chip | Sample Split | Mean ALT Allele Frequency | Median ALT Allele Frequency |
---|---|---|---|
MNEc 2M Variants | WGS + SNP | 0.2115920561 | 0.0975609756 |
SNP Only | 0.208498773 | 0.0900621118 | |
WGS Only | 0.2313047405 | 0.1258278146 | |
MNEc 670k Variants | WGS + SNP | 0.267280485 | 0.1729559748 |
SNP Only | 0.2647029832 | 0.1682389937 | |
WGS Only | 0.2836436744 | 0.1895424837 |