Table 3 The genes analysed for association with TSC, TY and TSY in the whole QUEST population

DMG401006826

I: 64.5

Aldehyde oxidase (AOX)

RADseq (3 SNPs *)^b

TY (3), TSY (3)

Hormone synthesis, reactive oxygen species [65]

DMG400018273

I: 79.2

NADPH:adrenodoxin oxidoreductase, mitochondrial (ADXR)

RADseq (8 SNPs)

TSC (1), TY (7), TSY (5)

Steroid metabolism (uniprot/P22570)^c

DMG400010234

II: 32.0

Cysteine protease Cp5 (CP5)

RADseq (13 SNPs)

TSC (13), TY (8)

Protein degradation [66]

DMG400030664

II: 42.1

Sporulation protein RMD5 (SpRMD5)

RADseq (25 SNPs)

TSC (8), TY (19), TSY (14)

Regulation of gluconeogenesis (uniprot/Q12508)

DMG400030565

V: 3.7

Fructose-bisphosphate aldolase (FBA)

solcap_snp_c2_11924

TSC

Glycolysis, gluconeogenesis, Calvin cycle [67]

DMG400007286

VI: 0.2

Chloroplast protein 12 (CP12.1)

solcap_snp_c2_54011

TY, TSY, TSC

Calvin cycle [68]

DMG400020173

VI: 58.2

Mak, serine/threonine protein kinase (MAK)

RADseq (9 SNPs *)

TSC (4), TY (9), TSY (6)

Posttranslational regulation https://www.ncbi.nlm.nih.gov/gene/4117

DMG400020103

VI: 58.2

Glycosyltransferase QUASIMODO1 (QUA1)

solcap_snp_c2_9201, 9202, 9203

TY (3), TSY (2)

Pectin synthesis, cell wall [69]

DMG400017649

IX: 44.1

Pentatricopeptide repeat-containing protein (PPR)

RADseq (13 SNPs *)

TSC (11), TY (11)

Organelle biogenesis and function [70, 71]

DMG400029622

IX: 58.4

60S acidic ribosomal protein P0 (RP60S)

solcap_snp_c2_3063

TY, TSY

Protein synthesis [72, 73]

DMG400007797

XII: 1.3

Citrate synthase (CIS)

RADseq (3 SNPs *), solcap_snp_c2_25372

TSC (2), TY (2)

Tricarboxylic acid cycle, carbohydrate metabolism (uniprot/Q43175)