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Table 3 The genes analysed for association with TSC, TY and TSY in the whole QUEST population

From: Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array

Locusa Chromosome: [Mbp] (4.03) Annotation (locus acronym) Differential SNPs (No. of SNPs in RADseq) Differential for traits (No. of SNPs) Function category
DMG401006826 I: 64.5 Aldehyde oxidase (AOX) RADseq (3 SNPs *)b TY (3), TSY (3) Hormone synthesis, reactive oxygen species [65]
DMG400018273 I: 79.2 NADPH:adrenodoxin oxidoreductase, mitochondrial (ADXR) RADseq (8 SNPs) TSC (1), TY (7), TSY (5) Steroid metabolism (uniprot/P22570)c
DMG400010234 II: 32.0 Cysteine protease Cp5 (CP5) RADseq (13 SNPs) TSC (13), TY (8) Protein degradation [66]
DMG400030664 II: 42.1 Sporulation protein RMD5 (SpRMD5) RADseq (25 SNPs) TSC (8), TY (19), TSY (14) Regulation of gluconeogenesis (uniprot/Q12508)
DMG400030565 V: 3.7 Fructose-bisphosphate aldolase (FBA) solcap_snp_c2_11924 TSC Glycolysis, gluconeogenesis, Calvin cycle [67]
DMG400007286 VI: 0.2 Chloroplast protein 12 (CP12.1) solcap_snp_c2_54011 TY, TSY, TSC Calvin cycle [68]
DMG400020173 VI: 58.2 Mak, serine/threonine protein kinase (MAK) RADseq (9 SNPs *) TSC (4), TY (9), TSY (6) Posttranslational regulation https://www.ncbi.nlm.nih.gov/gene/4117
DMG400020103 VI: 58.2 Glycosyltransferase QUASIMODO1 (QUA1) solcap_snp_c2_9201, 9202, 9203 TY (3), TSY (2) Pectin synthesis, cell wall [69]
DMG400017649 IX: 44.1 Pentatricopeptide repeat-containing protein (PPR) RADseq (13 SNPs *) TSC (11), TY (11) Organelle biogenesis and function [70, 71]
DMG400029622 IX: 58.4 60S acidic ribosomal protein P0 (RP60S) solcap_snp_c2_3063 TY, TSY Protein synthesis [72, 73]
DMG400007797 XII: 1.3 Citrate synthase (CIS) RADseq (3 SNPs *), solcap_snp_c2_25372 TSC (2), TY (2) Tricarboxylic acid cycle, carbohydrate metabolism (uniprot/Q43175)
  1. aDetails in Additional files 3 and 8
  2. b* indicates that at least one SNP caused an amino acid change
  3. cEntry in the uniprot database (http://www.uniprot.org/)
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BMC Genomics

ISSN: 1471-2164

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