|
SNP name
|
SNP alleles phu/tbr
|
Chromosome
|
Minor allele frequencya
|
TSC (R2)b
|
TY (R2)b
|
TSY (R2)b
|
SNP differential in case-control population for
|
|---|
|
ADXR_SNP5705 (5710)
c
|
T/C
|
I
|
0.491 (C)
|
ns
|
* (2.0) ↑
|
** (3.5) ↑
|
TY, TSY, TSC
|
|
CP5_SNP3041
|
C/T
|
II
|
0.442 (C)
|
*** (5.1) ↑
|
ns
|
ns
|
TSC, TY
|
|
FBA_SNP_c2_11924
|
C/T
|
V
|
0.103 (T)
|
** (3.0) ↑
|
* (1.4) ↑
|
** (3.8) ↑
|
TSC
|
|
CP12.1_SNP_c2_54011
|
C/T
|
VI
|
0.082 (T)
|
ns
|
** (3.1) ↓
|
* (2.1) ↓
|
TY, TSY, TSC
|
|
MAK_SNP7832 (7475, 7634 7588)
|
T/C
|
VI
|
0.467 (T)
|
ns
|
*** (5.0) ↓
|
** (3.5) ↓
|
TY, TSY
|
|
MAK_SNP7576
|
G/A
|
VI
|
0.491 (A)
|
ns
|
*** (4.6) ↓
|
*** (5.9) ↓
|
TSC, TY, TSY
|
|
MAK_SNP7884
|
A/C
|
VI
|
0.113 (A)
|
ns
|
** (2.8) ↑
|
* (1.5) ↑
|
novel
|
|
QUA1_SNP_c2_9204
|
G/A
|
VI
|
0.452 (G)
|
ns
|
** (2.7) ↓
|
* (1.8) -
|
novel
|
|
QUA1_SNP9502
|
G/A
|
VI
|
0.070 (G)
|
ns
|
** (3.3) ↑
|
* (1.8) -
|
novel
|
|
QUA1_SNP_c2_9203
|
C/G
|
VI
|
0.453 (C)
|
ns
|
** (3.0) ↓
|
* (2.2) -
|
TY, TSY
|
|
PPR_SNP7181
|
T/C
|
IX
|
0.495 (C)
|
*** (4.8) ↑
|
ns
|
ns
|
TSC, TY
|
|
PPR_SNP7037 (7077)
|
C/T
|
IX
|
0.440 (T)
|
** (3.1) ↑
|
ns
|
ns
|
TSC, TY
|
|
PPR_SNP7083
|
A/G
|
IX
|
0.318 (G)
|
** (2.2) -
|
ns
|
ns
|
TSC, TY
|
|
RP60S_SNP_c2_3063
|
T/C
|
IX
|
0.157 (T)
|
* (1.3) ↑
|
* (2.0) ↑
|
** (3.9) ↑
|
TY, TSY
|
|
CIS_SNP4479
|
C/G
|
XII
|
0.438 (C)
|
*** (4.2) ↓
|
ns
|
ns
|
novel
|
- Associations of SNPs with a minimum minor allele frequency of 1% and at least one association at p < 0.01 are shown
-
aThe minor frequency allele is shown in parenthesis
-
bns = not significant at α =0.05; * significant at α = 0.05, ** significant at α = 0.01, *** significant at α = 0.001; Arrows indicate the effect of the minor frequency SNP allele on the trait compared to the population mean: ↑ increasing, ↓ decreasing, − ambiguous
-
cNumbers in parenthesis identify SNPs in nearly complete LD that showed similar associations
