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Table 2 Number of putative and validated SNPs from each dataset

From: Identification of SNPs associated with muscle yield and quality traits using allelic-imbalance analyses of pooled RNA-Seq samples in rainbow trout

SNP Group Total SNPs Polymorphic Monomorphic Failed assay Success rate
All putative SNPs (95,234) 92 72 11 9 86.7%
GATK/SAMTool common SNPs (50,289) 88 72 8 8 90.0%
Total SNPs with allelic imbalance 68 55 7 6 88.7%
GATK unique SNPs with allelic imbalance 25 21 3 1 87.5%
SAMTool unique SNPs with allelic imbalance 10 4 2 4 66.7%
GATK/SAMTool common SNPs with allelic imbalance 33 30 2 1 93.8%