miRNA | Fold change of miRNA | Accession | Homology | Target genes | Potential roles | Relative change of target genes |
---|---|---|---|---|---|---|
miR158 | 9.23711361** | orange1.1g022993m | AT5G62740.1 | SPFH/Band 7/PHB domain-containing membrane-associated protein family | Stress response | 0.73** |
miR1222 | −13.23073355** | orange1.1g037429m | AT4G27220.1 | NB-ARC domain-containing disease resistance protein | Disease resistance protein | ND |
miR2919 | 6.01101607** | orange1.1g002089m | AT3G14940.1 | Phosphoenolpyruvate carboxylase 3 | Carbohydrate metabolism | 0.53** |
miR3437 | 3.97352136** | orange1.1g040557m | AT1G56140.1 | Leucine-rich repeat transmembrane protein kinase | Transmembrane signal transduction | 0.65** |
miR7821 | 4.13197145** | orange1.1g010745m | AT1G29760.1 | Putative adipose-regulatory protein (Seipin) | Triacylglycerol accumulation and LD proliferation | 0.95 |
miR394 | −5.44692358** | orange1.1g000114m | AT1G20960.1 | U5 small nuclear ribonucleoprotein helicase, putative | mRNA processing | 1.48 |
miR414 | 3.01957377** | orange1.1g004767m | AT1G17980.1 | Poly(A) polymerase 1 | mRNA processing | 0.76 |
 |  | orange1.1g006232m | AT1G17980.1 | Poly(A) polymerase 1 | mRNA processing | 0.72** |
miR418 | 2.16768709** | orange1.1g003146m | AT1G20780.1 | Senescence-associated E3 ubiquitin ligase 1 | Ubl conjugation pathway | 0.78 |
miR6150 | 8.95879131** | orange1.1g009434m | AT5G62810.1 | Peroxin 14 | Protein import into peroxisome matrix, docking | 3.91** |
 |  | orange1.1g009573m | AT5G62810.1 | Peroxin 14 | Protein import into peroxisome matrix, docking | 2.36* |
 |  | orange1.1g018459m | AT3G28715.1 | ATPase, V0/A0 complex, subunit C/D | ATP hydrolysis coupled proton transport | 0.82 |
miR6278 | 8.85634619** | orange1.1g005896m | AT3G14470.1 | NB-ARC domain-containing disease resistance protein | Disease resistance protein | 1.63** |
 |  | orange1.1g030696m | AT5G17840.1 | DnaJ/Hsp40 cysteine-rich domain superfamily protein | Stress response | 1.56** |
miR1847 | −2.21361107** | orange1.1g026316m | AT5G35530.1 | Ribosomal protein S3 family protein | Translation | 2.76** |
 |  | orange1.1g026835m | AT5G35530.1 | Ribosomal protein S3 family protein | Translation | 1.84* |
 |  | orange1.1g029201m | AT2G31610.1 | Ribosomal protein S3 family protein | Translation | 1.91 |
miR6028 | −2.29912898** | orange1.1g005923m | AT2G33580.1 | LysM-containing receptor-like kinase 5 | Transmembrane signal transduction | 0.67** |
 |  | orange1.1g034040m | AT5G42990.1 | Ubiquitin-conjugating enzyme 18 | Protein ubiquitination | ND |
 |  | orange1.1g021729m | AT4G29100.1 | Basic helix-loop-helix (bHLH) DNA-binding superfamily protein | Transcription factor | ND |
 |  | orange1.1g026539m | AT1G79020.1 | Enhancer of polycomb-like transcription factor protein | Transcription regulation | ND |
 |  | orange1.1g045123m | AT4G35800.1 | RNA polymerase II large subunit | mRNA synthesis | ND |
 |  | orange1.1g003175m | AT4G14700.1 | Origin recognition complex 1 | DNA synthesis and replication | 0.57** |
 |  | orange1.1g006076m | AT3G46790.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |  | 6.01** |
 |  | orange1.1g029970m | AT3G49940.1 | LOB domain-containing protein 38 |  | 6.05** |
 |  | orange1.1g028357m | AT2G45850.2 | AT-hook motif nuclear-localized protein 9 (AHL9) | Transcription factor | 6.12** |
miR5176 | 4.58746604** | orange1.1g005789m | AT4G09140.1 | MUTL-homologue 1 | DNA mismatch repair | 3.21** |
 |  | orange1.1g008397m | AT4G09140.1 | MUTL-homologue 1 | DNA mismatch repair | 2.87** |
 |  | orange1.1g010846m | AT4G09140.1 | MUTL-homologue 1 | DNA mismatch repair | 3.13** |
 |  | orange1.1g012406m | AT4G09140.1 | MUTL-homologue 1 | DNA mismatch repair | 5.39* |
miR7121 | 4.74373348** | orange1.1g005267m | AT1G71400.1 | Receptor like protein 12 | Hormone-mediated signaling pathway | 0.66** |
 |  | orange1.1g005542m | AT1G71400.1 | Receptor like protein 12 | Hormone-mediated signaling pathway | 0.77** |
 |  | orange1.1g008628m | AT1G71400.1 | Receptor like protein 12 | Hormone-mediated signaling pathway | 1.76** |
 |  | orange1.1g002167m | AT5G27060.1 | Receptor like protein 53 | Hormone-mediated signaling pathway | 5.01** |
 |  | orange1.1g012980m | AT5G53390.1 | O-acyltransferase (WSD1-like) family protein | Lipid and fatty-acid metabolism | 0.86 |
 |  | orange1.1g013532m | AT5G53390.1 | O-acyltransferase (WSD1-like) family protein | Lipid and fatty-acid metabolism | 0.72** |
 |  | orange1.1g027358m | AT5G03080.1 | Phosphatidic acid phosphatase (PAP2) family protein | Dephosphorylation | 0.53** |
 |  | orange1.1g027353m | AT5G03080.1 | Phosphatidic acid phosphatase (PAP2) family protein | Dephosphorylation | 0.56** |
miR6190 | −3.61190068** | orange1.1g029300m | AT5G64200.1 | Ortholog of human splicing factor SC35 | SR protein | 2.65** |
 |  | orange1.1g017284m | AT5G34850.1 | Purple acid phosphatase 26 | Phosphate ion homeostasis | 1.82** |
 |  | orange1.1g002842m | AT4G01810.1 | Sec23/Sec24 protein transport family protein | Intracellular protein transport | 1.64** |
miR6446 | −3.77151631** | orange1.1g016909m | AT5G09300.1 | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | Lipid and fatty-acid metabolism | 3.23** |
 |  | orange1.1g023827m | AT5G09300.1 | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | Lipid and fatty-acid metabolism | 2.56** |
 |  | orange1.1g001557m | AT5G20280.1 | Sucrose phosphate synthase 1F | C-compound and carbohydrate metabolism | 3.51** |
 |  | orange1.1g002665m | AT5G20280.1 | Sucrose phosphate synthase 1F | C-compound and carbohydrate metabolism | 3.93** |
miR6485 | −4.69704327** | orange1.1g001969m | AT5G20730.2 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | Transcription factor | 1.41* |
 |  | orange1.1g011274m | AT3G22810.1 | Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region |  | 1.68** |
 |  | orange1.1g031218m | AT1G07400.1 | HSP20-like chaperones superfamily protein | Stress response | 0.88 |
 |  | orange1.1g009779m | AT1G08960.1 | Cation exchanger 11 | Transport | 0.57** |
 |  | orange1.1g029454m | AT5G51160.1 | Ankyrin repeat family protein |  | 0.20** |
 |  | orange1.1g013633m | AT1G28560.1 | SnRNA activating complex family protein | Auxin signaling pathway | 2.27** |
 |  | orange1.1g017698m | AT1G28560.1 | SnRNA activating complex family protein | Auxin signaling pathway | 1.33** |
 |  | orange1.1g042988m | AT5G62850.1 | Nodulin MtN3 family protein | Transport | 0.59** |
 |  | orange1.1g007868m | AT1G72650.2 | Myb family transcription factor TRFL6 | Transcription factor | 4.39** |
 |  | orange1.1g046667m | AT2G38940.1 | Phosphate transporter 1;4 | Phosphate transport | 0.91 |
 |  | orange1.1g001289m | AT1G14610.1 | Valyl-tRNA synthetase / valine-tRNA ligase (VALRS) | Protein biosynthesis | 1.75** |
 |  | orange1.1g001303m | AT1G14610.1 | Valyl-tRNA synthetase / valine-tRNA ligase (VALRS) | Protein biosynthesis | 1.99** |
 |  | orange1.1g001757m | AT1G14610.1 | Valyl-tRNA synthetase / valine-tRNA ligase (VALRS) | Protein biosynthesis | 1.11 |
 |  | orange1.1g024117m | AT2G47920.1 | Kinase interacting (KIP1-like) family protein |  | 0.21** |
 |  | orange1.1g036588m | AT4G20140.1 | Leucine-rich repeat transmembrane protein kinase | Transmembrane signal transduction | 4.54* |
 |  | orange1.1g003591m | AT5G05680.1 | Nuclear pore complex protein NUP88 | mRNA transport, protein transport | 1.59* |
miR1044 | −5.19771615** | orange1.1g001378m | AT1G10170.1 | NF-X-like 1 | Protein ubiquitination | 2.00** |
 |  | orange1.1g001376m | AT1G10170.1 | NF-X-like 1 | Protein ubiquitination | 2.61* |
 |  | orange1.1g047796m | AT2G38380.1 | Peroxidase superfamily protein | Stress response | 1.97** |
 |  | orange1.1g042193m | AT5G03340.1 | ATPase, AAA-type, CDC48 protein | Cell cycle, cell division, protein transport, transport | 4.02* |
 |  | orange1.1g019546m | AT2G40340.1 | Integrase-type DNA-binding superfamily protein | Abscisic acid signaling pathway | 0.60** |
miR5198 | −5.36879795** | orange1.1g002063m | AT1G72180.1 | Leucine-rich receptor-like protein kinase family protein | Transmembrane signal transduction | 1.84** |
miR5029 | −5.99278869** | orange1.1g012168m | AT5G53450.1 | OBP3-responsive gene 1 |  | 0.03** |
 |  | orange1.1g026587m | AT4G31300.3 | Proteasome subunit beta type-6 (PBA1) | Protein ubiquitination | 2.26** |
 |  | orange1.1g029964m | AT4G31300.3 | Proteasome subunit beta type-6 (PBA1) | Protein ubiquitination | 2.21** |
 |  | orange1.1g030788m | AT4G31300.3 | Proteasome subunit beta type-6 (PBA1) | Protein ubiquitination | 2.91** |
 |  | orange1.1g014625m | AT3G23510.1 | Cyclopropane-fatty-acyl-phospholipid synthase | Lipid and fatty-acid metabolism | 2.44** |
 |  | orange1.1g018123m | AT3G44160.1 | Outer membrane OMP85 family protein | Transmembrane transport | 1.43* |
miR5261 | −6.08070339** | orange1.1g018132m | AT3G56930.1 | DHHC-type zinc finger family protein |  | 1.94** |
 |  | orange1.1g010695m | AT3G12640.1 | RNA binding (RRM/RBD/RNP motifs) family protein | mRNA processing | 2.40** |
 |  | orange1.1g011967m | AT3G12640.1 | RNA binding (RRM/RBD/RNP motifs) family protein | mRNA processing | 2.80** |
 |  | orange1.1g031636m | AT1G67620.1 | Lojap-related protein |  | 2.41** |
 |  | orange1.1g033883m | AT1G67620.1 | Lojap-related protein |  | 2.03** |
 |  | orange1.1g004959m | AT5G66850.1 | Mitogen-activated protein kinase kinase kinase 5 | Intracellular signalling | 1.97* |
 |  | orange1.1g043928m | AT2G36110.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | 3′-5′ exonuclease activity | 3.32** |
 |  | orange1.1g037980m | AT2G36110.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | 3′-5′ exonuclease activity | 2.17** |
 |  | orange1.1g004713m | AT5G54260.1 | DNA repair and meiosis protein (Mre11) | DNA damage, DNA repair, meiosis | 4.47** |
 |  | orange1.1g010785m | AT3G26020.2 | Protein phosphatase 2A regulatory B subunit family protein | Intracellular signalling | 2.01* |
 |  | orange1.1g000012m | AT1G55860.2 | Ubiquitin-protein ligase 1 (E3 ubiquitin-protein ligase UPL1) | Protein ubiquitination | 2.05** |
 |  | orange1.1g000013m | AT1G55860.2 | Ubiquitin-protein ligase 1 (E3 ubiquitin-protein ligase UPL1) | Protein ubiquitination | 2.82** |
 |  | orange1.1g029528m | AT5G01520.1 | RING/U-box superfamily protein | Protein ubiquitination | 4.05* |
 |  | orange1.1g029508m | AT1G22360.1 | UDP-glucosyl transferase 85A2 | Flavonoid biosynthetic process | 1.99** |
miR3438 | −9.31063262** | orange1.1g000163m | AT1G55325.2 | RNA polymerase II transcription mediators |  | 2.29 |
miR1151 | −10.44661802** | orange1.1g018149m | AT5G49610.1 | F-box family protein | Protein ubiquitination | 1.82* |
 |  | orange1.1g018125m | AT5G49610.1 | F-box family protein | Protein ubiquitination | 2.69* |
 |  | orange1.1g023739m | AT2G41870.1 | Remorin family protein |  | 4.00** |
 |  | orange1.1g027436m | AT2G41870.1 | Remorin family protein |  | 2.11** |
 |  | orange1.1g023033m | AT2G36690.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | Oxidoreductase | 2.03* |
 |  | orange1.1g026453m | AT1G17020.1 | Senescence-related gene 1 | Oxidoreductase | 2.31** |
 |  | orange1.1g020233m | AT2G36690.1 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |  | 3.73* |
 |  | orange1.1g037473m | AT5G07480.1 | KAR-UP oxidoreductase 1 | Oxidoreductase | 1.92 |
miR6219 | −11.91465055** | orange1.1g010903m | AT5G15130.1 | WRKY DNA-binding protein 72 | Transcription factor | 1.65** |
miR7708 | −8.18079862** | orange1.1g023136m | AT1G06890.1 | Nodulin MtN21 /EamA-like transporter family protein |  | 2.14** |
miR780 | −12.80878923** | orange1.1g044623m | AT5G17230.2 | Phytoene synthase | Carotenoid biosynthesis | 2.15* |
 |  | orange1.1g030826m | AT2G26560.1 | Phospholipase A 2A | Lipid degradation | ND |
 |  | orange1.1g004573m | AT4G27220.1 | NB-ARC domain-containing disease resistance protein | Disease resistance | 1.58** |
miR160 | 10.33203655** | orange1.1g005482m | AT4G30080.1 | Auxin response factor 16 | Auxin signaling pathway | 4.54* |
 |  | orange1.1g004896m | AT2G28350.1 | Auxin response factor 10 | Auxin signaling pathway | 22.94** |
 |  | orange1.1g005075m | AT4G30080.1 | Auxin response factor 16 | Auxin signaling pathway | 4.01** |
 |  | orange1.1g008078m | AT1G77850.1 | Auxin response factor 17 | Auxin signaling pathway | 2.90* |