accD nuclear transfer of Platycodon grandiflorum and the plastid of early Campanulaceae

BMC Genomics

Table 3 Plastid protein-coding gene distribution among Campanulaceae species

	Platycodon	Hanabusaya	Trachelium	Campanula	Adenophora		Platycodon	Hanabusaya	Trachelium	Campanula	Adenophora
accD	−	−	ΨΨ	−	−	psbH	+	+	+	+	+
atpA	+	+	+	+	+	psbI	+	+	+	+	+
atpB	+	+	+	+	+	psbJ	+	+ +Ψ	+ + +	+ +Ψ	+ +Ψ
atpE	+	+	+	+	+	psbK	+	+	+	+	+
atpF	+	+	+	+	+	psbL	+	+	+	+	+
atpH	+	+	+	+	+	psbM	+	+	+	+	+
atpI	+	+	+	+	+	psbN	+	+	+	+	+
ccsA	+	+	+	+	+	psbT	+	+	+	+	+
cemA	+	+	+	+	+	psbZ	+	+	+	+	+
clpP	Ψ	ΨΨ	ΨΨ	ΨΨ	ΨΨ	rbcL	+	+	+	+	+
infA	−	−	Ψ	Ψ	Ψ	rpl14	+ +	+	+	+	+
matK	+	+	+	+	+	rpl16	+ +	+	+	+	+
ndhA	+ +	+ +	+ +	+ +	+ +	rpl2	+ +	+	+	+	+
ndhB	+ +	+ ¹	+	+	Ψ	rpl20	+	+	+	+	+
ndhC	+	+	+	+	+	rpl22	+ +	+	+	+	+
ndhD	+	+	+	+	+	rpl23	ΨΨΨΨ	Ψ	Ψ	Ψ	Ψ
ndhE	+Ψ	+	+Ψ	+Ψ	+Ψ	rpl32	+	+	+	+	+
ndhF	+	+	+	+	+	rpl33	+	+	+	+	+
ndhG	+ +	+ +	+ +	+ +	+ +	rpl36	+ +	+	+	+	+
ndhH	+ +	+ +	+ +	+ +	+ +	rpoA	+	+	+	+	+
ndhI	+ +	+ +	+	+ +	+ +	rpoB	+	+	+	+	+
ndhJ	+	+	+	+	+	rpoC1	+	+	+	+	+
ndhK	+	+	Ψ	+	+	rpoC2	+	+	+	+	+
petA	+	+	+	+	+	rps11	+	+	+	+	+
petB	+	+	+	+	+	5′ rps12	+	+ +	+ +	+ +	+ +
petD	+	+	+	+	+	3′ rps12	+ +	+	+	+	+
petE	−	+	−	−	−	rps14	+	+	+	+	+
petG	+	+	+	+	+	rps15	+ +	+ +	+ +	+ +	+ +
petL	+	+	+	+	+	rps16	+ ²	+	+	+	+
petN	+	+	+	+	+	rps18	+	+	+	+	+
psaA	+	+	+	+	+	rps19	+ +	+	+	+	+
psaB	+	+	+	+	+	rps2	+	+	+	+	+
psaC	+	+	+	+	+	rps3	+ +	+	+	+	+
psaI	+	+	+	+	+	rps4	+	+	+	+	+
psaJ	+	+	+	+	+	rps7	+ +	+	+	+	+
psbA	+	+	+	+	+	rps8	+ +	+	+	+	+
psbB	+	+ΨΨ	+ΨΨ	+ΨΨ	+ΨΨ	ycf1	+ +	+ +	+	+ +	+ +
psbC	+	+	+	+	+	ycf2	+ +	+	Ψ	+	+
psbD	+	+	+	+	+	ycf3	+	+Ψ	+ΨΨ	+ΨΨ	+ΨΨ
psbE	+	−	+	+	+	ycf4	+	+	+	+	+
psbF	+	+	+	+	+	ycf15	+ +	−	Ψ	Ψ	−

‘+’ indicates presence of the gene, ‘Ψ’ indicates pseudo-copy of the gene, and ‘-’ indicates complete absence of the gene. ‘ΨΨ’ indicates two pseudo-copies of the gene
1, 5′ end variation; 2, GTG starting codon

ISSN: 1471-2164