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Table 1 Alignment summary

From: The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data

Sample

Total reads

Mapped reads

Unmapped reads

TCGA-A7-A0D9-DNA_NB

142,860,012

136,174,786

6,685,226

TCGA-A7-A0D9-DNA_NT

158,844,243

155,372,460

3,471,783

TCGA-A7-A0D9-DNA_TP

138,383,452

136,764,896

1,618,556

TCGA-A7-A0D9-RNA_NT

141,376,864

134,152,483

7,224,381

TCGA-A7-A0D9-RNA_TP

149,200,610

141,630,167

7,570,443

TCGA-BH-A0B3-DNA_NB

211,311,809

209,315,407

1,996,402

TCGA-BH-A0B3-DNA_NT

170,360,878

165,875,755

4,485,123

TCGA-BH-A0B3-DNA_TP

159,731,541

158,253,223

1,478,318

TCGA-BH-A0B3-RNA_NT

164,452,329

156,498,369

7,953,960

TCGA-BH-A0B3-RNA_TP

164,079,925

155,833,920

8,246,005

TCGA-BH-A0B8-DNA_NB

171,951,966

170,021,858

1,930,108

TCGA-BH-A0B8-DNA_NT

143,464,049

140,389,068

3,074,981

TCGA-BH-A0B8-DNA_TP

216,218,230

213,713,105

2,505,125

TCGA-BH-A0B8-RNA_NT

152,562,120

143,571,886

8,990,234

TCGA-BH-A0B8-RNA_TP

128,002,634

122,243,065

5,759,569

TCGA-BH-A0BJ-DNA_NB

147,410,868

145,768,369

1,642,499

TCGA-BH-A0BJ-DNA_NT

162,172,150

158,678,527

3,493,623

TCGA-BH-A0BJ-DNA_TP

143,442,013

141,770,778

1,671,235

TCGA-BH-A0BJ-RNA_NT

138,807,984

131,847,427

6,960,557

TCGA-BH-A0BJ-RNA_TP

149,966,756

144,440,232

5,526,524

TCGA-BH-A0BM-DNA_NB

159,310,853

156,835,192

2,475,661

TCGA-BH-A0BM-DNA_NT

165,501,253

162,838,285

2,662,968

TCGA-BH-A0BM-DNA_TP

119,192,355

117,149,967

2,042,388

TCGA-BH-A0BM-RNA_NT

149,007,565

138,576,725

10,430,840

TCGA-BH-A0BM-RNA_TP

117,977,848

100,498,089

17,479,759

TCGA-BH-A0C0-DNA_NB

176,208,298

173,440,163

2,768,135

TCGA-BH-A0C0-DNA_NT

177,261,968

172,796,230

4,465,738

TCGA-BH-A0C0-DNA_TP

143,339,652

141,217,919

2,121,733

TCGA-BH-A0C0-RNA_NT

189,543,380

180,211,183

9,332,197

TCGA-BH-A0C0-RNA_TP

125,992,620

118,740,948

7,251,672

TCGA-BH-A0DK-DNA_NB

160,749,783

158,782,935

1,966,848

TCGA-BH-A0DK-DNA_NT

158,654,513

155,523,188

3,131,325

TCGA-BH-A0DK-DNA_TP

178,103,631

175,051,156

3,052,475

TCGA-BH-A0DK-RNA_NT

191,328,391

184,115,083

7,213,308

TCGA-BH-A0DK-RNA_TP

143,488,953

136,143,128

7,345,825

TCGA-BH-A0DP-DNA_NB

157,712,348

155,347,716

2,364,632

TCGA-BH-A0DP-DNA_NT

167,557,587

163,348,435

4,209,152

TCGA-BH-A0DP-DNA_TP

168,097,321

165,554,381

2,542,940

TCGA-BH-A0DP-RNA_NT

169,655,182

159,641,615

10,013,567

TCGA-BH-A0DP-RNA_TP

136,210,380

129,171,483

7,038,897

TCGA-BH-A0E0-DNA_NB

151,357,163

141,201,519

10,155,644

TCGA-BH-A0E0-DNA_NT

159,040,104

156,614,176

2,425,928

TCGA-BH-A0E0-DNA_TP

130,825,456

129,444,757

1,380,699

TCGA-BH-A0E0-RNA_NT

146,561,149

136,899,519

9,661,630

TCGA-BH-A0E0-RNA_TP

111,749,610

105,126,617

6,622,993

TCGA-BH-A0H7-DNA_NB

170,784,467

168,285,144

2,499,323

TCGA-BH-A0H7-DNA_NT

173,665,210

169,363,318

4,301,892

TCGA-BH-A0H7-DNA_TP

156,659,296

154,959,185

1,700,111

TCGA-BH-A0H7-RNA_NT

154,651,936

146,599,114

8,052,822

TCGA-BH-A0H7-RNA_TP

186,962,558

179,990,244

6,972,314