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Table 2 Unique SwissProt IDs for transcripts differentially expressed by EMB exposure and F. margolisi infection

From: Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis)

Functional annotation term Accession ID Count (# Unique SwissProt IDs) P-value of enrichment
MS EMB Shared MS EMB
Overexpressed contigs
 ATP binding GO:0005524 25 18 10 4E-04 2E-05
 Chaperone Keywords 16 10 10 2E-08 3E-06
 Chaperonin-containing T-complex GO:0005832 4 4 4 3E-04 5E-05
 Chaperonin Cpn60/TCP-1 IPR002423 9 6 6 3E-11 2E-07
 Cytosol GO:0005829 15 11 7 0.002 0.001
 Nucleotide-binding Keywords 31 17 9 2E-05 8E-04
 Protein folding GO:0006457 17 11 11 6E-10 3E-07
 Protein metabolic process GO:0019538 36 26 15 4E-04 1E-05
Underexpressed contigs
 Disulfide bond Keywords 20 12 9 2E-05 8E-05
 Extracellular region GO:0005576 17 8 7 1E-05 0.003
 Glycoprotein Keywords 21 15 13 0.005 1E-04
 Integral to membrane GO:0016021 32 17 14 0.005 0.005
 Peptidase activity, acting on L-amino acid peptides GO:0070011 13 8 7 7E-04 0.002
 Peptidase S1 and S6, chymotrypsin/Hap IPR001254 6 4 3 6E-04 0.004
 Protease Keywords 13 8 7 8E-04 0.002
 Serine protease Keywords 8 6 5 8E-05 9E-05
 Secreted Keywords 13 8 7 1E-04 5E-04
 Substrate-specific transmembrane transporter activity GO:0022891 10 6 5 0.02 0.03
 Transmembrane Keywords 32 17 14 3E-04 0.001
  1. Transcripts (unique SwissProt IDs only) from each main effect list (2-way ANOVA; p < 0.01; FC ≥ 1.5 main effect and no interaction effect) were analyzed independently and then compared for similar functional enrichments including Gene Ontology (GO), InterPro (IPR), and SP_PIR_Keyword (Keywords; [61,62,63]. The numbers of transcripts responding to both stressors are displayed in the shared count column. See Additional files 1 and 2 for transcript IDs and SwissProt accessions for each functional term