Identification of new protein-coding genes with a potential role in the virulence of the plant pathogen Xanthomonas euvesicatoria

Table 2 Novel genes identified in this study

ID^a	Name	Neighboring genes	Detected protein length (aa)	Plausible protein length (aa)^b
New CDS found on Xe chromosome
0136836	XCV_PG01	XCV0062-XCV0063	242	256
0055942	XCV_PG02	XCV0209-XCV0210	114	116
0028571	XCV_PG03	XCV0214-XCV0215	241	306
0056540	XCV_PG04	XCV0282-XCV0283	77	98
0065083	XCV_PG05	parE-pyrG	25	59
0094126	XCV_PG06	XCV2618-XCV2619	76	107
0043902	XCV_PG07	XCV2723-XCV2724	42	70
0089084	XCV_PG08	XCV3389-virB6	111	161
0020369	XCV_PG09	XCV3391-XCV3392	73	141
0143360	XCV_PG10	XCV3494	47	117
0087222	XCV_PG11	XCV3657-xpsD	59	99
0022971	XCV_PG12	XCV3783-XCV3784	150	191
0050568	XCV_PG13	rsmC-XCV3801	131	157
0112004	XCV_PG14	kefC-XCV4167	125	148
0111304	XCV_PG15	xylB2-XCV4282	65	‡
0081693	XCV_PG16	XCV4416-XCV4417	112	141
New CDS found on Xe plasmids
0175626	XCV_PG17	after XCVa0002	53	60
0173148	XCV_PG18	before XCVc0001	34	109
0172926	XCV_PG19	tnpR-XCVc0009	74	76
0174118	XCV_PG20	XCVc0025-XCVc0026	123	138
0169438	XCV_PG21	XCVd0054-XCVd0055	92	132
0166803	XCV_PG22	XCVd0124-XCVd0125	107	129
New CDS found antisense to annotated CDS
0152041	XCV_PG23	anti-XCV2096†	30	39
0122029	XCV_PG24	anti-XCV2593†	258	258
0049655	XCV_PG25	anti-xadA1†	1552	1597
0080326	XCV_PG26	anti-XCV4209†	200	203
0166979	XCV_PG27	anti-XCVd0155†	41	51
0013218	XCV_PG28	anti-glk1*	143	162
0008300	XCV_PG29	anti-XCV1454*	508	‡
0007106	XCV_PG30	anti-gcvP*	820	837

^a Number of the corresponding six-frame-database entry
† no MS-data for the annotated protein detected
* MS-data for the annotated protein detected
^b Protein length till the next plausible translation start site (ATG, GTG, TTG)
‡ No plausible translation start site (ATG, GTG, TTG) between detected peptide and the next upstream stop codon
For detailed information see Additional file 3

ISSN: 1471-2164