From: De novo assembly of Phlomis purpurea after challenging with Phytophthora cinnamomi
Contig | Putative identity | Reported function or role, notes | fold change | padja | fold change | padja | Ref | |
---|---|---|---|---|---|---|---|---|
12Â h | 24Â h | Â | Â | 12Â h | 24Â h | Â | ||
21722 | 113347 | cytochromes P450 enzyme | lignin biosynthetic pathway, membrane protein | 40.3 | 0.001 | 10.7 | 2.54 e-06 | |
66810 | - | β-ketoacyl-CoA synthase/reductase | cutine biosynthesis | 30.5 | 7.71 e-14 | - | - | |
61695 | 57161 | 1-acyl-sn-glycerol-3-phosphate/acyltransferase | cutine biosynthesis | 2.4 | 0.04 | 2.5 | 0.006 | |
85447 | 27377 | o-acyltransferase | BAHD acyltransferases superfamily biosynthesis cutine/suberine | 57.8 | 1.97 e-05 | 2.2 | 0.025 | [48] |
5933 | 13339 | hydroxycinnamoyltransferase | BAHD acyltransferases superfamily involved in cutin and suberin synthesis | 2.5 | 0.01 | 2.9 | 0.7 | [48] |
5854 | - | hydroxycinnamoyl-CoAacetyltransferas | BAHD acyltransferases superfamily (idem) | 2.6 | 0.04 | - | - | [48] |
27011 | 83517 | desacetoxyvindoline acetyltransferase | BAHD acyltransferases superfamily (idem) | 6.9 | 0.27 | 2.7 | 0.07 | [48] |
9911 | 53108 | myb | regulators of cuticle biosynthesis | 3.2 | 0.001 | 12.1 | 0.0002 | [49] |
62249 | 52265 | myb-related | Â | 4.7 | 0.02 | 2.3 | 0.3 | [50] |
66721 | 131269 | myb-like | Â | 2.5 | 0.05 | 3.2 | 1 | [50] |
9580 | 76701 | r2r3-myb | regulation of cell wall biosynthesis | 6.2 | 0.1 | 2.09 | 0.7 | [52] |
5647 | 56253 | abc (ATP-Binding Cassette) | transporter in cuticular lipid export | 6.5 | 1.15 e-07 | 3.1 | 0.0002 | |
2081 | - | xyloglucan:xyloglucosyl transferase | restructuring and integration in cell walls | 7.3 | 2.42 e-10 | - | - | [56] |
64844 | - | glycosyltransferase | catalyzes transfer of sugars from nucleotide DP to a nucleophilic glycosyl acceptor | 7.7 | 0.0006 | - | - | [56] |
80942 | 87785 | α-expansin | catalyze extension of cell walls | 5.4 | 0.1 | 3.9 | 0.07 | [57] |
837 | - | expansin-like | Â | 3.4 | 0.0002 | - | - | [57] |
7846 | 36167 | cinnamoyl CoA:NADP oxidoreductase (CCR) | catalyzes 1st step synthesis of lignin monomers | 11.9 | 0.0007 | 2.3 | 0.13 | [60] |
25358 | - | cinnamyl alcohol dehydrogenase | biosynthetic route to monolignols | 6.9 | 0.004 | - | - | [61] |
10016 | - | cinnamate 4-hydroxylase | lignin biosynthetic pathway, membrane protein | 7.3 | 5.34 e-10 | - | - | [62] |
1432 | - | 4-coumarate 3-hydroxylase | lignin biosynthetic pathway, membrane protein | 6.5 | 1.17 e-07 | - | - | [62] |
1081 | Â | phenylalanine ammonia-lyase | biosynthetic route toward monolignols | 7.1 | 0.00016 | Â | Â | [62] |
26215 | 8769 | laccase | monolignol polymerization | 11.6 | 0.0002 | 5.9 | 2.8 e-07 | [63] |
21125 | - | lacase-14 | Â | 13.6 | 0.17 | - | - | Â |
- | 70446 | laccase-like | Â | - | - | 6.4 | 0.05 | Â |
- | 70447 | laccase-13 | Â | - | - | 2.7 | 1 | Â |
13754 | - | laccases 17 | Â | 3.2 | 0.35 | - | - | [64] |
781 | 7923 | peroxidase | monolignol oxidation | 3.6 | 0.0005 | 5.2 | 2.24 e-06 | [12] |
20241 | 99047 | CASP-like | Scaffolding activities involved in subcellular precision of lignin polymerization | 4.4 | 0.05 | 6.0 | 0.9 | [66] |
5106 | 14096 | AP2 | Transcription factor. Play various roles including response to biotic and environmental stress. | 17.7 | 0.0009 | 3.1 | 0.01 | |
2245 | 53577 | GDSL (esterases/lipases) | Involved in defence from pathogens and stress, plant development, morphogenesis | 30.9 | 4.18 e-22 | 9.92 | 4.2 e-08 | |
51706 | - | lipase | Â | 6.2 | 0.007 | - | - | |
766 | 9217 | phospholipase | Â | 11.0 | 1.13 e-09 | 2.4 | 0.009 | |
- | 24143 | esterase | Â | - | - | 8.9 | 0.0004 | |
15968 | - | cc-nbs-lrr | resistance-genes in plant response to pathogens | 7.7 | 0.0006 | - | - | |
64844 | - | glycosyltransferase | catalyzes transfer of sugars from nucleotide DP to a nucleophilic glycosyl acceptor | 7.7 | 0.0006 | - | - | [78] |
12279 | 69649 | udp-glycosyltransferase | catalyzes conversion of cycloartenol to steroidal saponins | 11.1 | 1.01 e-14 | 3.5 | 0.0016 | [79] |
1718 | - | farnesyl synthase | involved in biosynthetic route to triterpenes | 2.7 | 0.001 | - | - | [79] |
13713 | - | squalene synthase | involved in biosynthetic route to triterpenes | 3.3 | 0.0001 | - | - | |
- | 8585 | cyclase | catalyzes cyclisation of oxidosqualene a step of the triterpene biosynthesis | - | - | 2.8 | 0.002 | |
54620 | - | brassinosteroid | acceptor of UGT enzymes that glycosylate triterpenes (saponin biosynthesis) | 8.7 | 2.23 e-06 | - | - | [79] |
24145 | - | β-amyrin synthase | part of plant triterpene biosynthetic cluster | 2.2 | 0.02 | - | - | [785,79] |
62788 | - | terpene | enzymes involved in terpene metabolism | 23.6 | 7.31 e-15 | - | - | |
51457 | - | pathogenesis-related proteins | acting as chitinases, glucosidases, peroxidases | 6.2 | 0.0004 | - | - | [84] |