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Table 3 Phlomis purpurea genes putatively involved in structural barriers and induced defence responses against Phytophthora cinnamomi

From: De novo assembly of Phlomis purpurea after challenging with Phytophthora cinnamomi

Contig Putative identity Reported function or role, notes fold change padja fold change padja Ref
12 h 24 h    12 h 24 h  
21722 113347 cytochromes P450 enzyme lignin biosynthetic pathway, membrane protein 40.3 0.001 10.7 2.54 e-06 [43, 44]
66810 - β-ketoacyl-CoA synthase/reductase cutine biosynthesis 30.5 7.71 e-14 - - [46, 47]
61695 57161 1-acyl-sn-glycerol-3-phosphate/acyltransferase cutine biosynthesis 2.4 0.04 2.5 0.006 [46, 47]
85447 27377 o-acyltransferase BAHD acyltransferases superfamily
biosynthesis cutine/suberine
57.8 1.97 e-05 2.2 0.025 [48]
5933 13339 hydroxycinnamoyltransferase BAHD acyltransferases superfamily involved in cutin and suberin synthesis 2.5 0.01 2.9 0.7 [48]
5854 - hydroxycinnamoyl-CoAacetyltransferas BAHD acyltransferases superfamily (idem) 2.6 0.04 - - [48]
27011 83517 desacetoxyvindoline acetyltransferase BAHD acyltransferases superfamily (idem) 6.9 0.27 2.7 0.07 [48]
9911 53108 myb regulators of cuticle biosynthesis 3.2 0.001 12.1 0.0002 [49]
62249 52265 myb-related   4.7 0.02 2.3 0.3 [50]
66721 131269 myb-like   2.5 0.05 3.2 1 [50]
9580 76701 r2r3-myb regulation of cell wall biosynthesis 6.2 0.1 2.09 0.7 [52]
5647 56253 abc (ATP-Binding Cassette) transporter in cuticular lipid export 6.5 1.15 e-07 3.1 0.0002 [46, 55]
2081 - xyloglucan:xyloglucosyl transferase restructuring and integration in cell walls 7.3 2.42 e-10 - - [56]
64844 - glycosyltransferase catalyzes transfer of sugars from nucleotide DP to a nucleophilic glycosyl acceptor 7.7 0.0006 - - [56]
80942 87785 α-expansin catalyze extension of cell walls 5.4 0.1 3.9 0.07 [57]
837 - expansin-like   3.4 0.0002 - - [57]
7846 36167 cinnamoyl CoA:NADP oxidoreductase (CCR) catalyzes 1st step synthesis of lignin monomers 11.9 0.0007 2.3 0.13 [60]
25358 - cinnamyl alcohol dehydrogenase biosynthetic route to monolignols 6.9 0.004 - - [61]
10016 - cinnamate 4-hydroxylase lignin biosynthetic pathway, membrane protein 7.3 5.34 e-10 - - [62]
1432 - 4-coumarate 3-hydroxylase lignin biosynthetic pathway, membrane protein 6.5 1.17 e-07 - - [62]
1081   phenylalanine ammonia-lyase biosynthetic route toward monolignols 7.1 0.00016    [62]
26215 8769 laccase monolignol polymerization 11.6 0.0002 5.9 2.8 e-07 [63]
21125 - lacase-14   13.6 0.17 - -  
- 70446 laccase-like   - - 6.4 0.05  
- 70447 laccase-13   - - 2.7 1  
13754 - laccases 17   3.2 0.35 - - [64]
781 7923 peroxidase monolignol oxidation 3.6 0.0005 5.2 2.24 e-06 [12]
20241 99047 CASP-like Scaffolding activities involved in subcellular precision of lignin polymerization 4.4 0.05 6.0 0.9 [66]
5106 14096 AP2 Transcription factor. Play various roles including response to biotic and environmental stress. 17.7 0.0009 3.1 0.01 [72, 73]
2245 53577 GDSL (esterases/lipases) Involved in defence from pathogens and stress, plant development, morphogenesis 30.9 4.18 e-22 9.92 4.2 e-08 [74, 77]
51706 - lipase   6.2 0.007 - - [76, 77]
766 9217 phospholipase   11.0 1.13 e-09 2.4 0.009 [76, 92]
- 24143 esterase   - - 8.9 0.0004 [76, 77]
15968 - cc-nbs-lrr resistance-genes in plant response to pathogens 7.7 0.0006 - - [82, 83]
64844 - glycosyltransferase catalyzes transfer of sugars from nucleotide DP to a nucleophilic glycosyl acceptor 7.7 0.0006 - - [78]
12279 69649 udp-glycosyltransferase catalyzes conversion of cycloartenol to steroidal saponins 11.1 1.01 e-14 3.5 0.0016 [79]
1718 - farnesyl synthase involved in biosynthetic route to triterpenes 2.7 0.001 - - [79]
13713 - squalene synthase involved in biosynthetic route to triterpenes 3.3 0.0001 - - [78, 79]
- 8585 cyclase catalyzes cyclisation of oxidosqualene a step of the triterpene biosynthesis - - 2.8 0.002 [78, 79]
54620 - brassinosteroid acceptor of UGT enzymes that glycosylate triterpenes (saponin biosynthesis) 8.7 2.23 e-06 - - [79]
24145 - β-amyrin synthase part of plant triterpene biosynthetic cluster 2.2 0.02 - - [785,79]
62788 - terpene enzymes involved in terpene metabolism 23.6 7.31 e-15 - - [78, 79]
51457 - pathogenesis-related proteins acting as chitinases, glucosidases, peroxidases 6.2 0.0004 - - [84]
  1. The fold change and the p-value (padj) are shown in separate columns for transcripts up-regulated at 12 and 24 h post-challenge. A dash indicates no contig was found corresponding to a given putative identity at a specified post-challenge time point
  2. aOnly the lowest p-value is shown whenever more than one contig were found to have the same assignment regardless the value of their fold change