Table 4 Pathogen-specific RNA-binding protein clusters. The size of RBP clusters with members from only the pathogenic E. coli strains in our GWS of 19 E. coli strains have been listed in this table
Cluster number | Number of members | Cluster name |
|---|---|---|
Cluster 283 | 13 | KilA-N domain phage proteins |
Cluster 299 | 13 | tRNA(fMet)-specific VapC endonucleases |
Cluster 176 | 10 | DEAD/DEAH box helicases |
Cluster 307 | 10 | CRISPR type I-E/−associated proteins CasA/Cse1 |
Cluster 308 | 10 | CRISPR-associated proteins Cas6/Cse3/CasE, subtype I-E |
Cluster 309 | 10 | CRISPR type I-E/−associated proteins CasB/Cse2 |
Cluster 310 | 10 | CRISPR-associated proteins Cas5/CasD, subtype I-E |
Cluster 60 | 10 | Putative ATP/GTP-binding proteins |
Cluster 318 | 9 | ASCH domain-containing proteins |
Cluster 122 | 8 | Adenine DNA methyltransferases, phage-associated |
Cluster 305 | 8 | Post-segregational killing toxins |
Cluster 116 | 7 | RNA-binding proteins |
Cluster 298 | 6 | VagC, VagC-homologs |
Cluster 317 | 6 | Type I restriction-modification enzymes, M subunits |
Cluster 319 | 6 | Type I restriction-modification enzymes, R subunits |
Cluster 125 | 5 | Helicases |
Cluster 246 | 5 | DNA-binding proteins |
Cluster 287 | 5 | ATP-dependent helicases |
Cluster 288 | 5 | DEAD/DEAH box helicases |
Cluster 290 | 5 | DEAD/DEAH box helicases |
Cluster 63 | 5 | UvrD/REP helicase-like proteins |
Cluster 98a | 5 | Protein kinases |
Cluster 161 | 4 | 2′-5′ RNA ligases |
Cluster 300 | 4 | proQ/FINO family proteins |
Cluster 313 | 4 | ATP-dependent helicases, res subunit of Type III restriction enzyme, SNF2 family helicases |
Cluster 329 | 4 | Serine/Threonine kinases |
Cluster 301 | 3 | YajA proteins |
Cluster 323 | 3 | Putative pyridoxal phosphate-dependent enzymes, Putative transferases |
Cluster 324 | 3 | Sigma-54 dependent transcription regulators, Putative transcriptional regulators of NtrC family |
Cluster 326 | 3 | Leucin-rich repeat proteins |
Cluster 330 | 3 | Ankyrin repeat-containing domain proteins |
Cluster 172 | 2 | Zn-dependent hydrolases, including glyoxylases, Beta-lactamases |
Cluster 238 | 2 | Hypothetical proteins |
Cluster 302 | 2 | Peptidyl-arginine deiminases |
Cluster 303 | 2 | Exonucleases |
Cluster 315 | 2 | KilA-N domain phage proteins |
Cluster 320 | 2 | Pyocin, putative colicin activity proteins |
Cluster 325 | 2 | Hyothetical proteins |
Cluster 327 | 2 | KilA-N domain proteins |
Cluster 332 | 2 | Hypothetical phage associated proteins |
Cluster 334 | 2 | Hypothetical proteins |
Cluster 335 | 2 | Chromosome partitioning ParA proteins |
Cluster 336 | 2 | Serine/Threonine kinases |