Genome-wide analysis of LTR-retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.)

Table 1 Helianthus species analysed and number of Illumina reads used for the analyses

Species name	Section	Habits	Acronym	ARS-GRIN Id Code ^a	Raw reads	Trimmed reads (90 bp)
H. agrestis	Agrestis	annual	AGR	Ames 30845	40,986,566	40,808,492
H. annuus	Helianthus	annual	ANN	PI 435540	18,577,580	17,366,768
H. petiolaris ssp. fallax	Helianthus	annual	PFA	PI 435805	15,969,364	14,881,524
H. petiolaris ssp. petiolaris	Helianthus	annual	PPE	PI 435799	14,086,950	13,911,650
H. porteri	Divaricati	annual	POR	PI 649911	14,436,386	14,321,186
H. divaricatus	Divaricati	perennial	DIV	PI 435675	25,520,422	25,318,342
H. giganteus	Divaricati	perennial	GIG	Ames 21040	15,299,732	14,925,322
H. californicus	Divaricati	perennial	CAL	PI 649941	50,810,594	50,231,784
H. hirsutus	Divaricati	perennial	HIR	PI 547203	43,742,044	42,909,176
H laevigatus	Divaricati	perennial	LAE	PI 503227	36,682,094	36,393,234
H. tuberosus	Divaricati	perennial	TUB	Ames 22229	52,488,912	51,451,774

^agermplasm information for each accession can be accessed at https://npgsweb.ars-grin.gov/gringlobal/search.aspx

ISSN: 1471-2164