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Table 2 Summary of transcripts and unigenes of G. yamadae and G. asiaticum assembled using Trinity software

From: Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

 

G. yamadae

G. asiaticum

Transcripts

49,318

54,742

 Max length

19,126

16,773

 Average length

1006

1059

 N50

1957

2070

 Total residues

49,601,912

57,968,265

Unigenes

35,102

36,343

 Max length

19,126

16,773

 Average length

756

754

 N50

1654

1664

 Total residues

26,521,164

27,406,256

Full-length CDS

18,467

17,769

 Mean length

848

724

 > 90 bp

18,303 (99.1%)

17,685 (99.5%)