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Table 3 Sizes, SNP numbers and physical positions of haplotype blocks in the genome region of interest

From: Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

Haplotype block

No.of SNPs

Size of haplotype blocks (kb)

Tagged SNPs

Physical regions of haplotype blocks (bp)

1

2

3

i41355Gh i31583Gh

14,957,075–14,960,858

2

2

5

i21245Gh i24363Gh

15,861,607–15,866,716

4

2

1

i23752Gh i40299Gh

16,224,058–16,225,318

5

2

1

i20303Gh i20304Gh

18,847,855–18,849,240

6

2

18

i38154Gh i32970Gh

27,768,314–27,786,496

7

2

2

i27379Gh i42605Gh

28,871,439–28,873,835

9

2

12

i18314Gh i34016Gh

30,315,506–30,327,684

10

2

3

i07851Gh i16246Gh

31,607,896–31,611,204

11

5

66

i10039Gh i21752Gh i16837Gh i10042Gh i10043Gh

31,719,976–31,786,217

12

2

3

i12267Gh i12269Gh

33,229,157–33,232,678

14

5

82

i00119Gh i00140Gh i00141Gh i16817Gh i43183Gh

34,501,252–34,583,840

15

2

5

i20134Gh i20135Gh

36,073,111–36,078,743

16

3

22

i17680Gh i37718Gh i12365Gh

36,232,823–36,255,525

17

2

7

i43773Gh i17688Gh

36,696,056–36,703,949

19

2

9

i43694Gh i49350Gh

40,180,546–40,190,360

20

2

2

i15894Gh i06726Gh

40,908,038–40,910,540

21

2

1

i08629Gh i08630Gh

41,311,879–41,313,033

22

6

18

i06677Gh i06676Gh i15881Gh i06672Gh i06671Gh i06669Gh

41,859,643–41,878,504

23

3

1

i15880Gh i15879Gh i06667Gh

41,990,968–41,992,942

24

2

6

i14080Gh i19256Gh

42,064,655–42,071,032

25

2

2

i12647Gh i17790Gh

42,778,237–42,778,372

26

6

86

i12646Gh i20168Gh i41612Gh i28975Gh i17786Gh i17783Gh

42,778,734–42,865,091

27

3

2

i02170Gh i02171Gh i18366Gh

44,362,364–44,364,438

28

2

9

i34876Gh i28109Gh

46,465,757–46,475,660

29

2

4

i35043Gh i19582Gh

46,957,845–46,962,126

30

3

3

i00205Gh i09683Gh i16742Gh

48,055,522–48,059,062

31

2

3

i09656Gh i41953Gh

48,745,715–48,749,280

32

2

2

i09626Gh i19574Gh

49,309,585–49,312,204

33

4

53

i02953Gh i02943Gh i14755Gh i02942Gh

51,133,864–51,187,532

34

7

99

i09580Gh i16721Gh i09571Gh i46804Gh i38553Gh i09567Gh i09564Gh

51,907,040–52,006,561

35

4

16

i14164Gh i14163Gh i09551Gh i47386Gh

52,246,626–52,262,912

36

4

86

i09541Gh i22890Gh i00260Gh i19566Gh

52,646,775–52,732,926

37

2

10

i26632Gh i16725Gh

53,386,560–53,397,023