Higher taxa | Family | Species | organ | SRA Accession No. | read length (bp)a | RNA-Seq total readsb | mtDNA-derived reads | polyA readsc | Accession No. of reference mtDNAd |
---|---|---|---|---|---|---|---|---|---|
Squamata Lacertilia | Lacertidae | Takydromus tachydromoides | liver | DRR072216 | 101 | 53,655,734 | 3,627,027 | 8795 | LC101816 |
 | Scincidae | Scincella lateralis | liver | SRR629642 | 100 | 91,047,166 | 5,473,971 | 3035 | KU646826 |
 | Eublepharidae | Eublepharis macularius | liver | SRR629643 | 100 | 70,002,306 | 4,146,912 | 2889 | AB738955 |
 | Shinisauridae | Shinisaurus crocodilurus | liver | DRR034612 | 151 | 19,549,612 | 1,374,172 | 1280 | AB080274 |
 | Agamidae | Pogona vitticeps | liver | SRR629641 | 100 | 87,625,132 | 8,515,182 | 6198 | AB166795 |
 | Agamidae | Phrynocephalus przewalskii | mixed tissue | SRR1298770 | 100 | 111,576,922 | 8,671,591 | 2155 | NC_022719 |
 | Iguanidae | Sceloporus undulatus | liver | SRR629640 | 100 | 71,604,846 | 4,067,660 | 3333 | AB079242 |
Squamata Serpentes | Viperidae | Agkistrodon piscivorus | liver | SRR629645 | 100 | 75,023,884 | 8,161,006 | 3236 | DQ523161 |
 | Colubridae | Pantherophis guttatus | mixed tissue | ERR216308 | 100 | 27,504,812 | 999,617 | 700 | AM236349 |
 | Xenopeltidae | Xenopeltis unicolor | liver | SRR629647 | 100 | 89,792,506 | 5,340,226 | 2728 | AB179620 |
Testudines | Chelydridae | Chelydra serpentina | liver | SRR629521 | 100 | 67,455,518 | 2,811,802 | 1026 | EF122793 |
 | Emydidae | Terrapene carolina | liver | SRR629650 | 100 | 88,575,286 | 6,905,832 | 4410 | - |
 | Kinosternidae | Sternotherus odoratus | liver | SRR629648 | 100 | 95,375,174 | 2,977,994 | 1985 | NC_017607 |
 | Pelomeducidae | Pelusios castaneus | liver | SRR629649 | 100 | 90,326,648 | 8,875,110 | 4853 | KC692463 |
Crocodylia | Alligatoridae | Alligator mississippiensis | liver | SRR629636 | 100 | 72,260,274 | 3,303,351 | 4719 | Y13113 |
Aves | Phasianidae | Gallus gallus | liver | ERR348573 | 100 | 110,458,976 | 20,095,817 | 1182 | X52392 |
 | Upupidae | Upupa epops | retina and cochlea | SRR3203224 | 126 | 90,142,570 | 4,448,201 | 1550 | KT356220 |
 | Falconidae | Falco tinnunculus | retina and cochlea | SRR3203231 | 126 | 100,655,654 | 6,448,806 | 1403 | NC_011307 |
 | Accipitridae | Aegypius monachus | retina and cochlea | SRR3203236 | 126 | 95,683,290 | 5,999,094 | 1818 | KF682364 |
Mammalia | Hominidae | Homo sapiens | brain | SRR611068 | 101 | 80,651,654 | 8,716,424 | 49,201 | NC_012920 |
 | Muridae | Mus musculus | heart and kidney | SRR3655009 | 151 | 34,241,696 | 4,141,929 | 770 | NC_005089 |
 | Elephantidae | Elephas maximus | blood | SRR2911072 | 100 | 70,104,696 | 2,570,995 | 1531 | DQ316068 |
 | Bovidae | Bos taurus | liver | SRR3168807 | 100* | 48,278,779 | 2,277,754 | 5086 | AF492351 |
Amphibia | Pipidae | Xenopus tropicalis | brain | SRR1189558 | 101 | 31,605,646 | 1,092,532 | 706 | NC_006839 |