Development of novel InDel markers and genetic diversity in Chenopodium quinoa through whole-genome re-sequencing

Zhang, Tifu; Gu, Minfeng; Liu, Yuhe; Lv, Yuanda; Zhou, Ling; Lu, Haiyan; Liang, Shuaiqiang; Bao, Huabin; Zhao, Han

doi:10.1186/s12864-017-4093-8

Table 1 The list of quinoa from USDA and private collection

From: Development of novel InDel markers and genetic diversity in Chenopodium quinoa through whole-genome re-sequencing

Serial number	Accesion	Plant name	Origin	Source
1	Ames 13,214	Chucapaca	Bolivia, La Paz	USDA-NPGS
2^a	Ames 13,228	DE-1	Ecuador, Otavalo	USDA-NPGS
3	Ames 13,719	27 GR	United States, New Mexico^b	USDA-NPGS
4	Ames 13,720	TUNDRI	United States, New Mexico^b	USDA-NPGS
5	Ames 13,721	23 GR	United States, New Mexico^b	USDA-NPGS
6	Ames 13,722	7ALC	United States, New Mexico^b	USDA-NPGS
7	Ames 13,723	37TES	United States, New Mexico^b	USDA-NPGS
8	Ames 13,724	18 GR	United States, New Mexico^b	USDA-NPGS
9	Ames 13,725	46TES	United States, New Mexico^b	USDA-NPGS
10	Ames 13,726	49ALC	United States, New Mexico^b	USDA-NPGS
11	Ames 13,727	38TES	United States, New Mexico^b	USDA-NPGS
12	Ames 13,728	27 GR	United States, New Mexico^b	USDA-NPGS
13	Ames 13,729	10 GR	United States, New Mexico^b	USDA-NPGS
14	Ames 13,730	1ESP	United States, New Mexico^b	USDA-NPGS
15	Ames 13,731	42TES	United States, New Mexico^b	USDA-NPGS
16	Ames 13,732	40TES	United States, New Mexico^b	USDA-NPGS
17^a	Ames 13,733	20TES	United States, New Mexico^b	USDA-NPGS
18	Ames 13,734	47TES	United States, New Mexico^b	USDA-NPGS
19	Ames 13,735	17 GR	United States, New Mexico^b	USDA-NPGS
20	Ames 13,736	30TES	United States, New Mexico^b	USDA-NPGS
21	Ames 13,737	2 WANT	United States, New Mexico^b	USDA-NPGS
22	Ames 13,738	26TES	United States, New Mexico^b	USDA-NPGS
23	Ames 13,739	29TES	United States, New Mexico^b	USDA-NPGS
24	Ames 13,740	50ALC	United States, New Mexico^b	USDA-NPGS
25	Ames 13,741	54ALC	United States, New Mexico^b	USDA-NPGS
26	Ames 13,742	20 GR	United States, New Mexico^b	USDA-NPGS
27	Ames 13,743	ISLUGA	Chile	USDA-NPGS
28	Ames 13,744	409	United States, New Mexico^b	USDA-NPGS
29	Ames 13,745	KASLAEA	United States, New Mexico^b	USDA-NPGS
30	Ames 13,746	PISON	United States, New Mexico^b	USDA-NPGS
31	Ames 13,747	APELAWA	Bolivia	USDA-NPGS
32	Ames 13,748	COPACABANA	United States, New Mexico^b	USDA-NPGS
33	Ames 13,749	32ALC	United States, New Mexico^b	USDA-NPGS
34	Ames 13,750	31TES	United States, New Mexico^b	USDA-NPGS
35	Ames 13,751	21 GR	United States, New Mexico^b	USDA-NPGS
36	Ames 13,752	23TES	United States, New Mexico^b	USDA-NPGS
37	Ames 13,753	16 GR	United States, New Mexico^b	USDA-NPGS
38	Ames 13,754	52ALC	United States, New Mexico^b	USDA-NPGS
39	Ames 13,755	43ALC	United States, New Mexico^b	USDA-NPGS
40	Ames 13,756	3 UISE	United States, New Mexico^b	USDA-NPGS
41	Ames 13,757	53ALC	United States, New Mexico^b	USDA-NPGS
42	Ames 13,758	29TES	United States, New Mexico^b	USDA-NPGS
43	Ames 13,759	20ALC	United States, New Mexico^b	USDA-NPGS
44	Ames 13,760	75P	United States, New Mexico^b	USDA-NPGS
45	Ames 13,761	47TES	United States, New Mexico^b	USDA-NPGS
46	Ames 13,762	47TES	United States, New Mexico^b	USDA-NPGS
47	NSL 86628	537 BK60-B	United States, Maryland	USDA-NPGS
48	NSL 86649	PLANT VIRUS	United States, South Carolina	USDA-NPGS
49	NSL 91567	PLANT VIRUS	United States, New York	USDA-NPGS
50	NSL 92331	JAPANESE STRAIN	United States, Washington	USDA-NPGS
51	PI 433232	-	Chile, Groben	USDA-NPGS
52	PI 470932	Pasan Ralle	Bolivia, La Paz	USDA-NPGS
53	PI 476820	Santa Elena 7	Mexico, Chapingo	USDA-NPGS
54	PI 478408	R-64	Bolivia, La Paz	USDA-NPGS
55	PI 478411	R-67	Bolivia, La Paz	USDA-NPGS
56	PI 478414	R-70	Bolivia, La Paz	USDA-NPGS
57	PI 478415	R-71	Bolivia, La Paz	USDA-NPGS
58	PI 478418	R-132	Bolivia, Potosi	USDA-NPGS
59	PI 510532	Quinoa de Quiaca	Peru, Puno	USDA-NPGS
60^a	PI 510533	K’ello Quinoa (Quechua)	Peru, Puno	USDA-NPGS
61	PI 510534	Mezclada Tres Variedades (Span.)	Peru, Puno	USDA-NPGS
62	PI 510536	RB-35	Peru, Puno	USDA-NPGS
63	PI 510537	RB-52	Peru, Puno	USDA-NPGS
64^a	PI 510538	Jaro Juira (Aymara), Quinoa Am	Peru, Puno	USDA-NPGS
65	PI 510539	RB-57	Peru, Puno	USDA-NPGS
66	PI 510540	Grande (Span.)	Peru, Puno	USDA-NPGS
67	PI 510541	Blanca de Grano Grande (Span.)	Peru, Puno	USDA-NPGS
68	PI 510542	Villa Juira (Aymara), Quinoa R	Peru, Puno	USDA-NPGS
69	PI 510544	Juira Sajama (Aymara), Quinoa	Peru, Puno	USDA-NPGS
70	PI 510545	Ccankolla (Aymara), Quinoa Saj	Peru, Puno	USDA-NPGS
71	PI 510547	Ara Juira (Aymara), Quinoa Sil	Peru, Puno	USDA-NPGS
72	PI 510548	Yulaj Q’anq’olla (Quechua), Qu	Peru, Puno	USDA-NPGS
73	PI 510549	Yulaj K’oyto (Quechua), Quinoa	Peru, Puno	USDA-NPGS
74	PI 510551	Quinua (Quechua), Quinoa var.	Peru, Puno	USDA-NPGS
75	PI 584524	QQ056	Chile, Chillan	USDA-NPGS
76	PI 596293	COLORADO 407D	United States, Colorado	USDA-NPGS
77	PI 596498	Rosa Junin	Peru, Cuzco	USDA-NPGS
78	PI 614002	Ames 10,334	Bolivia, Cochabamba	USDA-NPGS
79	PI 614880	QQ065	Chile,Los Lagos	USDA-NPGS
80^a	PI 614881	QQ95	Argentina, Jujuy	USDA-NPGS
81	PI 614882	QQ67	Chile, La Araucania	USDA-NPGS
82	PI 614883	QQ101	Argentina, Jujuy	USDA-NPGS
83	PI 614885	QQ57	Chile, Bio-Bio	USDA-NPGS
84	PI 614886	QQ74	Chile, Maule	USDA-NPGS
85	PI 614887	QQ63	Chile, Bio-Bio	USDA-NPGS
86^a	PI 614888	QQ61	Chile, Bio-Bio	USDA-NPGS
87	PI 614889	QQ59	Chile, Bio-Bio	USDA-NPGS
88	PI 614901	CQ101	Bolivia, Oruro	USDA-NPGS
89	PI 614902	CQ102	Bolivia, Oruro	USDA-NPGS
90	PI 614903	CQ103	Bolivia, Oruro	USDA-NPGS
91	PI 614904	CQ104	Bolivia, Oruro	USDA-NPGS
92	PI 614905	CQ105	Bolivia, Oruro	USDA-NPGS
93	PI 614906	CQ106	Bolivia, Oruro	USDA-NPGS
94	PI 614907	CQ107	Bolivia, Oruro	USDA-NPGS
95	PI 614909	CQ109	Bolivia, Oruro	USDA-NPGS
96	PI 614910	CQ110	Bolivia, Oruro	USDA-NPGS
97	PI 614911	CQ111	Bolivia, Oruro	USDA-NPGS
98	PI 614912	CQ112	Bolivia, Oruro	USDA-NPGS
99	PI 614913	CQ113	Bolivia, Oruro	USDA-NPGS
100	PI 614914	CQ114	Bolivia, Oruro	USDA-NPGS
101	PI 614915	CQ115	Bolivia, Oruro	USDA-NPGS
102	PI 614916	CQ116	Bolivia, Oruro	USDA-NPGS
103	PI 614917	CQ117	Bolivia, Oruro	USDA-NPGS
104	PI 614918	CQ118	Bolivia, Oruro	USDA-NPGS
105	PI 614919	CQ119	Bolivia, Oruro	USDA-NPGS
106	PI 614921	CQ121	Bolivia, La Paz	USDA-NPGS
107	PI 614922	Sayana	Bolivia, La Paz	USDA-NPGS
108	PI 614923	Jamiri	Bolivia, La Paz	USDA-NPGS
109^a	PI 614924	CQ124	Bolivia, La Paz	USDA-NPGS
110	PI 614925	CQ125	Bolivia, La Paz	USDA-NPGS
111	PI 614927	CQ 127	Bolivia, La Paz	USDA-NPGS
112	PI 614928	CQ 128	Bolivia, La Paz	USDA-NPGS
113	PI 614929	CQ 129	Bolivia, La Paz	USDA-NPGS
114	PI 614930	CQ 130	Bolivia, La Paz	USDA-NPGS
115	PI 614931	CQ 131	Bolivia, Oruro	USDA-NPGS
116^a	PI 614932	CQ 132	Bolivia, Oruro	USDA-NPGS
117	PI 614933	CQ 133	Bolivia, Oruro	USDA-NPGS
118	PI 614935	CQ 135	Bolivia, Oruro	USDA-NPGS
119	PI 614936	CQ136	Bolivia, Oruro	USDA-NPGS
120	PI 614938	CQ139	Bolivia, Oruro	USDA-NPGS
121	PI 634917	Pichilemu	Chile, Bio-Bio	USDA-NPGS
122^a	PI 634918	Baer	Chile, Bio-Bio	USDA-NPGS
123	PI 634919	Pichaman	Chile, Bio-Bio	USDA-NPGS
124^a	-	Riobamba	The Netherlands^c	Private
125^a	-	Atlas	The Netherlands^c	Private
126	-	Pasto	The Netherlands^c	Private
127	-	-	China^c	Private
128	-	-	China^c	Private
129	-	-	Germany^c	Private

^aUsed for genomic re-sequencing
^bQuinoa accessions donated by Emigdio Ballón were assigned to “United States, New Mexico”
^cCollection place

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ISSN: 1471-2164

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