An uncertain model-based approach for identifying dynamic protein complexes in uncertain protein-protein interaction networks

Table 3 Performance comparison CDUN with other approaches using CYC2008 as benchmark

PPI Dataset	Methods	Precision	Recall	F-score	Sn	PPV	Accuracy
DIP	CDUN	0.6	0.551	0.575	0.431	0.641	0.526
	CSO	0.497	0.623	0.553	0.538	0.631	0.582
	Cluster ONE	0.337	0.441	0.382	0.378	0.696	0.513
	COAN	0.41	0.597	0.486	0.445	0.529	0.483
	COACH	0.307	0.602	0.406	0.544	0.456	0.498
	CMC	0.485	0.428	0.455	0.306	0.643	0.443
	HUNTER	0.852	0.119	0.208	0.164	0.644	0.325
	MCODE	0.423	0.14	0.21	0.282	0.362	0.32
	TransClust	0.13	0.674	0.218	0.622	0.725	0.672
	SpecClust	0.122	0.331	0.179	0.548	0.529	0.538
MIPS	CDUN	0.438	0.331	0.377	0.244	0.612	0.387
	CSO	0.391	0.344	0.365	0.283	0.641	0.426
	Cluster ONE	0.273	0.267	0.27	0.235	0.725	0.412
	COAN	0.356	0.352	0.354	0.261	0.636	0.407
	COACH	0.239	0.347	0.283	0.317	0.385	0.35
	CMC	0.335	0.322	0.328	0.361	0.468	0.411
	HUNTER	0.538	0.14	0.222	0.289	0.333	0.31
	MCODE	0.365	0.153	0.215	0.189	0.572	0.329
	TransClust	0.145	0.623	0.236	0.544	0.71	0.621
	SpecClust	0.095	0.182	0.125	0.41	0.37	0.389
STRING	CDUN	0.446	0.674	0.537	0.715	0.518	0.609
	Cluster ONE	0.13	0.343	0.188	0.671	0.494	0.569
	COACH	0.181	0.458	0.26	0.963	0.154	0.385
	HUNTER	0.5	0.017	0.033	0.107	0.353	0.194
	MCODE	0.079	0.131	0.099	0.681	0.257	0.418
	TransClust	0.11	0.517	0.181	0.842	0.528	0.667
	SpecClust	0.066	0.347	0.111	0.652	0.519	0.582

ISSN: 1471-2164