Table 1 Salient features of genome assembly of three Apophysomyces species
Assembly Statistics | A. variabilis | A. elegans | A. trapeziformis |
|---|---|---|---|
Number of scaffolds | 431 | 1528 | 1400 |
Number of contigs | 1155 | 1528 | 1400 |
Total size of scaffolds (bp) | 39,387,571 | 38,467,560 | 35,840,759 |
Scaffold N50 (bp) | 647,494 | 101,064 | 141,065 |
Average Scaffold size (bp) | 91,386 | 25,175 | 25,601 |
Max. scaffold size (bp) | 3,993,377 | 469,772 | 572,943 |
Min. scaffold size (bp) | 500 | 301 | 205 |
GC Content (%) | 41.65 | 41.69 | 41.90 |
Coding sequences (CDS) | |||
 Number of CDS | 12,764 | 12,829 | 12,108 |
 Total size of CDS (bp) | 25,752,686 | 25,262,110 | 24,132,511 |
 CDS N50 (bp) | 3141 | 3018 | 3067 |
 Average CDS size (bp) | 2018 | 1969 | 1993 |
 Max. CDS size (bp) | 34,923 | 35,019 | 35,013 |
 Min. CDS size (bp) | 57 | 44 | 43 |
 GC Content (%) | 45.49 | 45.54 | 45.69 |
 Exons (bp) | 97,463 | 98,425 | 94,508 |
 Average exon size (bases) | 263 | 255 | 254 |
 Exons/gene | 7.64 | 7.67 | 7.81 |
 Number of tRNA genes | 197 | 174 | 197 |
Non coding sequences | |||
 Introns (bp) | 79,821 | 80,964 | 78,014 |
 Introns/gene | 6.25 | 6.31 | 6.44 |
 Average intron length (bp) | 77 | 76 | 76 |