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Fig. 3 | BMC Genomics

Fig. 3

From: XCAVATOR: accurate detection and genotyping of copy number variants from second and third generation whole-genome sequencing experiments

Fig. 3

Summary of the results obtained by XCAVATOR on the 1000 Genomes Project samples. Panels a and b show the distribution of the size (a) and number (b) of CNVs detected by XCAVATOR and the other six state of the art tools. Panels c, d and e report precision and recall obtained by the seven tools in detecting CNVs previously identified by 1000GP pilot 1 (c), HapMap (d) and McCarroll (e). Light grey curves represent F-measure levels (harmonic mean of precision and recall). In panels f, g and h are reported the correlations between the absolute number of DNA copies inferred by SLM+FastCall and those previously estimated by 1000GP pilot 1 (f), HapMap (g) and McCarroll (h). R is the Pearson correlation coefficient and CCR is the correct classification rate, calculated as the proportion of genomic regions with the correct number of DNA copies

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BMC Genomics

ISSN: 1471-2164

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