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Table 11 Significantly expressed A. niger N402 genes from clusters A and I in the expression profiling tree

From: Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

  Up/Down-regulatedc Regulated by
  Genea Enzymeb CAZy family ΔxlnR ΔaraR ΔrhaR ΔgalX ΔamyR This study Literature Reference
A An15g00320 (sucB) SUC GH32 1.5 −1.3 −2.1 1.7 nd InuR [9, 52]
An15g07160 (pelF) PEL PL1 1.5 1.4 −2.1 −1.1 1.7 nd GaaR [15, 35, 72]
I An08g05230 LPMO AA9 −2.9 −1.2 1.3 RhaR nr [38]
An14g02670 LPMO AA9 −1.1 −1.7 −1.6 1.0 nd XlnR [21, 38]
An03g05380 XG-EGL GH12 nd nr [38]
An10g00870 (plyA) PLY PL1 nd nr [91]
An02g10550 (abnC) ABN GH43 −27.8 15.2 1.4 −1.8 49.2 XlnR nr [39]
An15g03550 ABN GH43 10.0 6.0 nd nr [38]
An07g07630 BGL GH3 2.9 3.1 nd nr [4]
An11g06080 BGL GH3 2.0 1.4 2.4 3.8 nd nr [4]
  1. aGenes with expression value of <50 in all studied A. niger N402 cultures are not included in the table
  2. bEnzyme codes are provided in Additional file 2
  3. cFold-change between A. niger N402 and the regulatory mutants grown on their relevant carbon source. - = expression value <50 in both N402 and regulatory mutant strain. Negative fold-changes >2.5 were considered proof of regulator function and are depicted in bold
  4. nd not detected, nr not reported