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Table 9 Significantly expressed A. niger N402 genes from cluster G in the expression profiling tree

From: Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

  Up/Down-regulatedc Regulated by
  Genea Enzymeb CAZy family ΔxlnR ΔaraR ΔrhaR ΔgalX ΔamyR This study Literature Reference
G-1 An17g00520 BGL GH3 1.6 1.5 nd nr [38]
An11g06540 (mndA) MND GH2 4.1 3.0 −2.8 1.2 2.6 AraR, RhaR nr [4]
An03g03740 (blg4) BGL GH1 4.1 1.0 −1.2 5.8 9.6 nd nr [38]
An12g01850 (mndB) MND GH2 −2.5 −1.5 1.0 1.9 13.4 XlnR nr [38]
An02g07590 na GH3 1.6 1.0 1.3 nd nr [38]
An09g05880 (agdE) AGD GH31 1.0 1.2 1.6 1.3 −1.1 nd nr [41]
G-2 An09g01190 (abnA) ABN GH43 5.5 −2.4 1.8 1.4 13.1 nd AraR, GaaR [34, 83]
An01g10350 (lacB) LAC GH35 1.9 −2.7 1.3 3.5 12.9 AraR AraR, GaaR [15, 34, 38]
An18g05940 (galA) GAL GH53 nd AraR, GaaR, RhaR [34, 84]
An01g12150 (lacA) LAC GH35 −8.9 −6.3 1.4 6.4 13.6 AraR, XlnR AraR, XlnR [23, 34, 85]
An08g10780 (gbgA) BXL GH43 −1.6 −29.7 2.8 11.7 5.2 AraR AraR [34, 39]
An08g01710 (abfC) ABF GH51 1.8 −8.7 1.8 7.7 31.1 AraR AraR, GaaR [15, 34, 39]
An15g02300 (abfB) ABF GH54 2.2 −6.2 1.3 18.8 159.4 AraR AraR [34, 46]
G-3 An01g01320 AGL GH27 3.8 AraR nr [38]
An17g00300 (xarB) BXL/ABF GH3 −2.8 −1.9 1.2 1.2 1.0 XlnR nr [47]
An01g04880 (axlB) AXL GH31 −2.2 1.0 1.8 1.8 1.2 nd nr [41]
An16g02760 (afcA) AFC GH95 −5.2 2.2 −1.3 1.7 5.9 XlnR nr [38]
An01g03340 (xgeA) XG-EGL GH12 −1.1 −2.1 nd nr [38]
An04g09690 (pmeB) PME CE8 nd AraR, GaaR [15, 34, 39]
An04g09700 (xghA) XGH GH28 −4.6 AraR AraR, GaaR [34, 86]
An01g11520 (pgaI) PGA GH28 nd GaaR [15, 34, 50]
An19g00270 (pelD) PEL PL1 nd AraR, GaaR, RhaR [15, 34, 72, 87]
  1. aGenes with expression value of <50 in all studied A. niger N402 cultures are not included in the table
  2. bEnzyme codes are provided in Additional file 2
  3. cFold-change between A. niger N402 and the regulatory mutants grown on their relevant carbon source. - = expression value <50 in both N402 and regulatory mutant strain. Negative fold-changes >2.5 were considered proof of regulator function and are depicted in bold
  4. na no assigned or predicted function, nd not detected, nr not reported