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Table 9 Selected nucleotide pattern frequencies from mouse and zebrafish

From: A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcripts

 

GRCm38 and GRCz10

1

aa, aaa, ac, aca, acg

2

act, ag, aga, at, ata

3

atc, atg, att, ca, caa

4

cac, cag, cat, cc, cca

5

ccc, cg, cgc, ct, cta

6

ctc, ctg, ga, gag, gc

7

gcg, gg, ggg, gt, gtc

8

gtg, ta, tac, tag, tat

9

tc, tca, tcg, tct, tg

10

tga, tgt, tt, ttg, ttt

  1. GRCm38 and GRCz10 data sets were analyzed to identify the 50 pattern frequencies with the highest PCA loadings
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BMC Genomics

ISSN: 1471-2164

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