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Table 2 The gene expression changes of IMF relevant QTLs across four developmental stages of Laiwu pigs

From: Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Chr.1

Gene

log2(FC)2

60 d vs 120 d

120 d vs 240 d

240 d vs. 400 d

X

SLC9A7

−1.44**

0.57

0.29

14

SCD

0.28

1.65***

−1.26***

12

PIK3R6

0.27

0.15

1.42**

6

PIK3C3

0.12

−1.15***

0.65*

3

LCLAT1

−0.79**

0.38

−0.68*

12

FASN

1.72***

1.79***

−1.75***

2

FADS2

−0.16

1.02**

−0.24

6

FABP3

0.80

−0.96

2.48

5

ATP5B

0.12

0.45

−0.84**

17

ANK1

−0.40

0.91**

0.02

6

ACSF3

−0.13

0.90**

−0.58*

4

SNAI2

0.24

1.37*

0.15

4

CA3

−0.35

0.10

0.82*

12

MYH3

0.86

0.94

−0.61

  1. 1Chr: Chromosome of gene located
  2. 2FC: FPKM fold-change between different groups. *p < 0.05; **p < 0.01; ***p < 0.001
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BMC Genomics

ISSN: 1471-2164

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