From: Whole-genome assembly of Babesia ovata and comparative genomics between closely related pathogens
Assembly method | Canu | Canu | Canu | HGAP3 |
---|---|---|---|---|
Subtraction of unreliable contigs | Yes | No | No | No |
total base pairs | 14,453,397 | 16,393,820 | 14,312,816 | 16,481,566 |
# of contigs | 91 | 228 | 206 | 533 |
N50 contig length | 2,090,503 | 2,093,449 | 408,732 | 97,655 |
N50 contig rank | 3 | 3 | 11 | 48 |
max contig length | 3,702,329 | 3,692,619 | 1,286,507 | 529,343 |
# of MinION raw reads | 458,947 | 458,947 | 458,947 | 0 |
# of MinION total base pairs | 1,592,957,533 | 1,592,957,533 | 1,592,957,533 | 0 |
# of PacBio sub reads | 388,599 | 388,599 | 0 | 388,599 |
# of PacBio total base pairs | 954,792,480 | 954,792,480 | 0 | 954,792,480 |