Table 5 Most abundant transcripts of P. riograndensis SBR5 under the chosen cultivation conditions
Gene | Product | RPKM Value |
|---|---|---|
rpsH | 30S ribosomal protein S8 | 71,849.57 |
P.riograndensis_final_4321 | N-acetyltransferase superfamily | 70,789.99 |
P.riograndensis_final_30 | Veg protein; sporulation, Stimulates biofilm formation via transcriptional activation of extracellular matrix genes | 53,361.67 |
P.riograndensis_final_5486 | Hypothetical protein | 39,913.22 |
P.riograndensis_final_2764 | Hypothetical membrane protein | 28,462.66 |
P.riograndensis_final_2316 | Small, acid-soluble spore protein superfamily | 24,204.00 |
P.riograndensis_final_1999 | PTS maltose transporter subunit IIBC | 21,134.31 |
P.riograndensis_final_6014 | 50S ribosomal protein L24 | 20,187.98 |
P.riograndensis_final_4594 | Hypothetical protein | 18,591.09 |
P.riograndensis_final_2529 | Hypothetical protein | 17,946.18 |
P.riograndensis_final_956 | Recombinase RecA | 17,771.90 |
P.riograndensis_final_5132 | Ribosomal S21 superfamily | 17,463.97 |
P.riograndensis_final_5601 | Small, acid-soluble spore protein superfamily | 16,757.65 |
P.riograndensis_final_1944 | Protein of unknown function DUF1292 superfamily | 15,456.74 |
ftsH | ATP-dependent zinc metalloprotease FtsH | 15,355.15 |
rpsS | 30S ribosomal protein S19 | 15,060.69 |
P.riograndensis_final_6183 | Conserved hypothetical protein | 14,247.19 |
P.riograndensis_final_6034 | 50S ribosomal protein L7A | 14,218.27 |
P.riograndensis_final_1943 | Crossover junction endodeoxyribonuclease RuvA | 11,659.67 |
P.riograndensis_final_1181 | Transcriptional regulator, TetR family | 11,466.86 |
P.riograndensis_final_6018 | 50S ribosomal protein L16 | 10,826.18 |