Table 3 Comparisons between ExUTR and other 3′-UTR mining tools
From: ExUTR: a novel pipeline for large-scale prediction of 3′-UTR sequences from NGS data
ExUTR | GETUTR | 3USS | UTRscan | |
|---|---|---|---|---|
Single transcript | Yes | No | Yes | Yes |
De novo assembly (genome-independent) | Yes | No | No | No |
Reference-based assembly | Yes | Yes | No | No |
High-throughput | Yes | Yes | No | No |
Web-based, user-friendly interface | No | No | Yes | Yes |
Computational resources requirement | Low | High | – | – |