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Table 4 Summary of TE content in four Boletales genome assemblies

From: Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales

Classification C. olivacea C. puteana H. pinastri S. lacrymans P. tinctorius
(43) families (108) families (87) families (230) families (432) families
Copies Full copies Coverage (%) Copies Full copies Coverage (%) Copies Full copies Coverage (%) Copies Full copies Coverage (%) Copies Full copies Coverage (%)
Class I
 LINE 30 4 0.03 0 0 0.00 0 0 0.00 0 0 0.00 317 41 0.80
 LINE (unknown) 29 5 0.02 11 3 0.01 23 3 0.02 0 0 0.00 14 1 0.01
 SINE 0 0 0.00 6 2 0.00 0 0 0.00 0 0 0.00 9 1 0.00
 LTR/Copia 36 7 0.09 441 27 0.83 267 10 0.72 3,773 86 6.04 1,617 101 2.43
 LTR/Gypsy 394 13 0.93 299 28 0.54 767 42 2.13 6,949 268 16.27 8,434 575 19.28
 LTR/LARD 0 0 0.00 60 8 0.08 0 0 0.00 0 0 0.00 361 2 0.53
 LTR/TRIM 15 4 0.02 136 4 0.08 0 0 0.00 0 0 0.00 576 93 0.20
 DIRS 0 0 0.00 0 0 0.00 0 0 0.00 0 0 0.00 361 36 0.58
 Penelope 0 0 0.00 0 0 0.00 0 0 0.00 69 11 0.15 0 0 0.00
Class II                
 Helitron 0 0 0.00 0 0 0.00 21 4 0.04 260 25 0.43 1,386 38 2.01
 TIR/DDE 361 28 0.52 362 38 0.68 1,089 55 2.16 2,148 166 3.04 3,366 255 4.25
 TIR (unknown) 143 34 0.18 720 115 1.10 323 49 0.36 736 67 1.55 1,115 40 1.85
 MITE 410 85 0.30 702 264 0.56 121 43 0.12 539 98 0.62 1,102 227 0.59
 Maverick (putative) 0 0 0.00 0 0 0.00 0 0 0.00 0 0 0.00 56 3 0.21
Unknown 67 4 0.07 99 9 0.06 865 133 0.99 1,138 167 1.34 8,611 708 8.44
TOTAL 1,485 184 2.15 2,836 498 3.94 3,476 339 6.54 15,612 888 29.45 27,325 2,121 41.17