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Table 3 The number of predicted post-translational modification sites in BoCNGC protein sequences

From: Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles

Protein ID

CAMP

CK2

AMD

PKC

ASN

TYR

MYR

RGD

LEU

SER

GLU

ATP

BoCNGC1

 

7

2

8

7

1

4

     

BoCNGC2

2

6

 

7

4

1

7

     

BoCNGC3

2

7

 

10

4

1

3

     

BoCNGC4

4

3

 

16

5

1

8

     

BoCNGC5

3

4

 

16

4

1

10

     

BoCNGC6

2

8

 

14

6

1

11

     

BoCNGC7

1

5

1

9

5

2

7

 

1

   

BoCNGC8

3

6

 

16

3

1

7

    

1

BoCNGC9

1

4

 

12

4

2

8

     

BoCNGC10

1

6

 

12

4

2

7

     

BoCNGC11

1

7

 

15

2

1

5

 

3

   

BoCNGC12

2

9

 

16

2

1

5

     

BoCNGC13

2

8

1

11

7

 

9

 

3

   

BoCNGC14

1

8

 

13

5

1

8

     

BoCNGC15

1

12

1

8

4

 

9

 

1

 

1

 

BoCNGC16

2

13

 

10

5

 

8

   

1

 

BoCNGC17

2

9

 

6

3

1

6

     

BoCNGC18

2

11

1

9

10

1

5

 

1

   

BoCNGC19

1

10

 

9

7

1

3

1

1

   

BoCNGC20

 

13

1

9

2

1

5

     

BoCNGC21

 

12

1

8

2

 

7

1

    

BoCNGC22

 

11

 

6

4

 

5

  

1

  

BoCNGC23

2

11

1

14

3

 

7

     

BoCNGC24

 

14

 

15

6

 

8

     

BoCNGC25

 

13

 

13

5

 

6

     

BoCNGC26

1

14

 

6

7

 

4

     
  1. cAMP/cGMP cAMP/cGMP-binding motif profile, SER serine-rich region profile, GLU glutamic acid-rich region profile, CAMP cAMP- and cGMP-dependent protein kinase phosphorylation site; CK2 casein kinase II phosphorylation site, AMD amidation site, PKC protein kinase C phosphorylation site, ASN N-glycosylation site, TYR tyrosine kinase phosphorylation site, MYR N-myristoylation site, RGD cell attachment sequence, LEU leucine zipper pattern, ATP ATP/GTP-binding site motif A (P-loop). Numbers given in each cell refer the total count of PTM sites found in each protein
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BMC Genomics

ISSN: 1471-2164

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