Table 2 Details of the regions of difference (RD) of lengths greater than 500 bp in the sequenced strains from Uruguay, as well as deletions found in PE/PPE-coding genes. Each RD is defined by an ID, and all deletions show the number of ORFs that cover, starting and ending coordinates, length, strains presenting these deletions and spoligotypes associated with them. Marked in bold are the RDs with more robust association to a given spoligotype
ID | Genes covered | Start | End | Length | Strains (MbURU-) | Spoligotypes associated | |
|---|---|---|---|---|---|---|---|
Previously described | RD3 | 14, Mb 1598-Mb1611c | 1,764,652 | 1,773,872 | 9221 | 001, 002, 003, 005, 007, 0010, 012, 014, 016 | SB0145, SB0130 |
RDbov145a | 2, Mb0026-Mb0027 | 29,475 | 30,078 | 604 | 001, 003, 005, 014, 016, 019, 020 | SBO145 | |
RDbovI 31 | 5, Mb0677c-Mb0681c | 756,105 | 757,654 | 1550 | 010 | X | |
RDbov145b | 1, serA2 | 824,054 | 824,599 | 546 | 001, 003, 005, 014, 016, 019, 020 | SB0145 | |
RDbov145c | 2, Mb0930-Mb0931 | 1,009,480 | 1,010,927 | 1448 | 001, 003, 005, 014, 016, 019, 020 | SB0145 | |
RDbovI 072 | 7, Mb1908-Mb1914c | 2,116,213 | 2,122,816 | 6604 | 006 | SB1072 | |
RDbovI 32 | 1, rmlB2 | 3,832,661 | 3,833,913 | 1253 | 007 | X | |
RDbov133 | 2, bisC-Mb1478c | 1,616,260 | 1,619,455 | 3196 | 012 | X | |
RDbov134 | 1, Mb3756 | 4,115,825 | 4,116,744 | 920 | 012 | X | |
RDbov130a | 1, Mb3923c | 4,310,701 | 4,311,694 | 994 | 002, 007, 010, 012, 017, 018 | SB0130 | |
PE/PPE | 1, PE_PGRS19 | 1,189,852 | 1,190,034 | 183 | 001, 003, 005, 014, 016, 019, 020 | SB0145 | |
1, PE_PGRS20 | 1,192,321 | 1,192,742 | 422 | 001, 003, 005, 014, 016, 019, 020 | SB0145 | ||
1, PE_PGRS24 | 1,486,342 | 1,486,528 | 187 | 001, 003, 005, 014, 016, 019, 020 | SB0145 | ||
1, PPE30 | 2,033,505 | 2,033,624 | 120 | 002, 007, 010, 012, 017, 018 | SB0130 | ||
1, PE_PGRS42d | 2,762,816 | 2,762,980 | 165 | 004, 008, 009, 011, 013, 015, 021, 022, 023 | SB0140, SB0274 | ||
1, PE_PGRS50b | 3,691,479 | 3,691,697 | 219 | 004, 006, 008, 009, 011, 013, 015, 021, 022, 023 | SB0140, SB0274, SB1072 | ||
1, PE_PGRS50b | 3,694,231 | 3,694,311 | 81 | 006 | SB1072 | ||
1, PE_PGRS51 | 3,733,072 | 3,733,247 | 176 | 001, 003, 005, 014, 016, 019, 020 | SB1045 | ||